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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013320
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 826 results. Now displaying 2 of 17 with 50 rows per page. This search has taken 6.195s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0134279.1
n.a. lectin [Robinia pseudoacacia] gi|4115547|dbj|BAA36415.1| chr0 61509135 61510872 +
3 domain predictions
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Lj0g3v0135119.1
n.a. PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1-like [Cicer arietinum] gi|502154452|ref|XP_004509705.1| chr0 62037472 62041504 +
2 domain predictions
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Lj0g3v0155449.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 3-like [Glycine max] gi|356567656|ref|XP_003552033.1| chr0 72887444 72891571 +
2 domain predictions
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Lj0g3v0162109.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Cicer arietinum] gi|502180487|ref|XP_004516649.1| chr0 76398426 76402109 +
2 domain predictions
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Lj0g3v0171399.1
n.a. Receptor protein kinase [Medicago truncatula] gi|357474855|ref|XP_003607713.1| chr0 82157478 82160213 +
2 domain predictions
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Lj0g3v0171409.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514935|ref|XP_003526157.1| chr0 82161320 82169128 -
2 domain predictions
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Lj0g3v0175109.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514907|ref|XP_003526143.1| chr0 84496026 84497454 -
2 domain predictions
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Lj0g3v0178359.1
n.a. Protein ssh4 [Medicago truncatula] gi|357465591|ref|XP_003603080.1| chr0 86503271 86506141 +
2 domain predictions
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Lj0g3v0188629.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Glycine max] gi|356547470|ref|XP_003542135.1| chr0 92195595 92197659 +
2 domain predictions
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Lj0g3v0191879.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 29-like [Glycine max] gi|356575757|ref|XP_003556003.1| chr0 93766675 93770342 -
2 domain predictions
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Lj0g3v0191889.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356575773|ref|XP_003556011.1| chr0 93771399 93775451 -
2 domain predictions
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Lj0g3v0193259.1
n.a. PREDICTED: lectin-domain containing receptor kinase VI.3-like [Glycine max] gi|356506567|ref|XP_003522051.1| chr0 94452248 94454029 -
3 domain predictions
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Lj0g3v0193779.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Cicer arietinum] gi|502084183|ref|XP_004487641.1| chr0 94600710 94603351 +
2 domain predictions
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Lj0g3v0193869.1
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357452493|ref|XP_003596523.1| chr0 94633989 94636695 +
2 domain predictions
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Lj0g3v0196229.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740-like [Glycine max] gi|356559015|ref|XP_003547797.1| chr0 95686819 95693065 -
2 domain predictions
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Lj0g3v0196349.1
n.a. Ser/Thr protein kinase [Lotus japonicus] gi|62857020|dbj|BAD95895.1| chr0 95734995 95738080 -
2 domain predictions
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Lj0g3v0196429.1
n.a. serine-threonine kinase [Phaseolus vulgaris] gi|38194928|gb|AAR13316.1| chr0 95758149 95760304 -
2 domain predictions
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Lj0g3v0196439.1
n.a. serine-threonine kinase [Glycine max] gi|351723221|ref|NP_001238551.1| chr0 95758289 95760304 -
2 domain predictions
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Lj0g3v0205339.1
n.a. PREDICTED: wall-associated receptor kinase-like 8-like [Glycine max] gi|356532449|ref|XP_003534785.1| chr0 102118634 102120215 +
2 domain predictions
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Lj0g3v0211199.1
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33-like [Glycine max] gi|356567624|ref|XP_003552017.1| chr0 106340131 106342338 +
3 domain predictions
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Lj0g3v0211209.1
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33-like [Cicer arietinum] gi|502154781|ref|XP_004509833.1| chr0 106342386 106342703 +
3 domain predictions
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Lj0g3v0211449.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300-like [Cicer arietinum] gi|502171796|ref|XP_004515104.1| chr0 106530167 106534430 +
2 domain predictions
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Lj0g3v0213669.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 29-like [Glycine max] gi|356574355|ref|XP_003555314.1| chr0 107936473 107937670 -
2 domain predictions
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Lj0g3v0213759.1
n.a. PREDICTED: serine/threonine-protein kinase PBS1-like isoform X2 [Cicer arietinum] gi|502083819|ref|XP_004487574.1| chr0 108025732 108028971 -
2 domain predictions
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Lj0g3v0214719.1
n.a. PREDICTED: beta-fructofuranosidase, insoluble isoenzyme 1-like [Glycine max] gi|356570859|ref|XP_003553601.1| chr0 108827336 108838623 +
2 domain predictions
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Lj0g3v0216069.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Cicer arietinum] gi|502124172|ref|XP_004498416.1| chr0 109719183 109719828 -
2 domain predictions
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Lj0g3v0217639.1
n.a. Lectin receptor kinase-like protein [Medicago truncatula] gi|357491803|ref|XP_003616189.1| chr0 110773780 110774222 +
3 domain predictions
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Lj0g3v0218539.1
n.a. PREDICTED: L-type lectin-domain containing receptor kinase S.6-like [Glycine max] gi|356534061|ref|XP_003535576.1| chr0 111436780 111437095 +
3 domain predictions
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Lj0g3v0220159.1
n.a. PREDICTED: phytosulfokine receptor 2-like [Glycine max] gi|356546862|ref|XP_003541841.1| chr0 112635233 112639990 -
2 domain predictions
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Lj0g3v0220169.1
n.a. PREDICTED: phytosulfokine receptor 2-like [Glycine max] gi|356546862|ref|XP_003541841.1| chr0 112635481 112639990 -
2 domain predictions
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Lj0g3v0221179.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Glycine max] gi|356536862|ref|XP_003536952.1| chr0 113421794 113427792 +
2 domain predictions
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Lj0g3v0224359.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Cicer arietinum] gi|502179965|ref|XP_004516537.1| chr0 115892871 115893254 +
2 domain predictions
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Lj0g3v0229589.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Solanum lycopersicum] gi|460387493|ref|XP_004239411.1| chr0 118892878 118894410 +
2 domain predictions
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Lj0g3v0237949.1
n.a. PREDICTED: probable receptor-like protein kinase At4g39110-like [Cicer arietinum] gi|502158019|ref|XP_004510997.1| chr0 123386875 123388697 +
2 domain predictions
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Lj0g3v0238029.1
n.a. PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like [Fragaria vesca subsp]. vesca] gi|470148837|ref|XP_004309954.1| chr0 123412223 123413240 +
3 domain predictions
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Lj0g3v0241709.1
n.a. PREDICTED: receptor-like serine/threonine-protein kinase At4g25390-like [Cicer arietinum] gi|502119504|ref|XP_004496642.1| chr0 125446127 125447519 +
2 domain predictions
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Lj0g3v0243349.1
n.a. PREDICTED: protein NSP-INTERACTING KINASE 3-like [Glycine max] gi|356497611|ref|XP_003517653.1| chr0 126210556 126215918 -
2 domain predictions
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Lj0g3v0245009.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 6-like [Glycine max] gi|356529332|ref|XP_003533249.1| chr0 127034652 127039161 +
2 domain predictions
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Lj0g3v0245719.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr0 127406672 127409069 +
2 domain predictions
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Lj0g3v0247299.1
n.a. Chain A, Lotus Tetragonolobus Seed Lectin (Isoform)gi|169404520|pdb|2EIG|B Chain B, Lotus Tetragonolobus Seed Lectin (Isoform)gi|169404521|pdb|2EIG|C Chain C, Lotus Tetragonolobus Seed Lectin (Isoform)gi|169404522|pdb|2EIG|D Chain D, Lotus Tetragonolobus Seed Lectin (Isoform)] gi|169404519|pdb|2EIG|A chr0 128145265 128145567 -
3 domain predictions
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Lj0g3v0248469.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK8-like isoform X1 [Cicer arietinum] gi|502144970|ref|XP_004505816.1| chr0 128790814 128795096 -
2 domain predictions
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Lj0g3v0248469.2
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK8-like isoform X1 [Cicer arietinum] gi|502144970|ref|XP_004505816.1| chr0 128790814 128795624 -
2 domain predictions
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Lj0g3v0249939.1
n.a. Kinase-like protein [Medicago truncatula] gi|357454055|ref|XP_003597308.1| chr0 129568127 129572119 -
2 domain predictions
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Lj0g3v0250199.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 29-like [Glycine max] gi|356574368|ref|XP_003555320.1| chr0 129693879 129697385 +
2 domain predictions
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Lj0g3v0251409.1
n.a. kinase family protein [Arabidopsis lyrata subsp]. lyrata] gi|297848354|ref|XP_002892058.1| chr0 130410527 130413416 -
2 domain predictions
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Lj0g3v0252549.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2-like [Cicer arietinum] gi|502157130|ref|XP_004510769.1| chr0 130962861 130966414 +
2 domain predictions
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Lj0g3v0254769.1
n.a. lectin [Robinia pseudoacacia] gi|606720|gb|AAA80183.1| chr0 132291627 132292250 +
3 domain predictions
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Lj0g3v0254789.1
n.a. lectin-related polypeptide [Robinia pseudoacacia] gi|4115549|dbj|BAA36416.1| chr0 132296341 132297033 +
3 domain predictions
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Lj0g3v0255899.1
n.a. protein kinase family protein [Glycine max] gi|351724465|ref|NP_001235011.1| chr0 132886409 132888985 +
2 domain predictions
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Lj0g3v0257389.1
n.a. PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like [Glycine max] gi|356529677|ref|XP_003533415.1| chr0 133590151 133594622 +
2 domain predictions
 –