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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003100
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 73 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 8.787s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0085500.3
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7JIR3|G7JIR3_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi4g1v0085500 LjG1.1_chr4 11269842 11279700 -
4 domain predictions
1 GO term
LotjaGi4g1v0283700.1
n.a. Dicer-like 3; TAIR: AT5G20320.1 dicer-like 4; Swiss-Prot: sp|P84634|DCL4_ARATH Dicer-like protein 4; TrEMBL-Plants: tr|K7MKZ2|K7MKZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283700 LjG1.1_chr4 65582409 65609480 +
4 domain predictions
1 GO term
LotjaGi5g1v0098400.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|A0A1J7GZK6|A0A1J7GZK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0098400 LjG1.1_chr5 17588138 17594886 -
3 domain predictions
1 GO term
LotjaGi5g1v0309200.1
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200 LjG1.1_chr5 62739741 62747587 +
4 domain predictions
1 GO term
LotjaGi5g1v0309200.2
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200 LjG1.1_chr5 62741055 62747148 +
4 domain predictions
1 GO term
LotjaGi5g1v0309200.3
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200 LjG1.1_chr5 62741055 62747148 +
4 domain predictions
1 GO term
LotjaGi6g1v0002100.1
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 557222 566137 +
4 domain predictions
1 GO term
LotjaGi6g1v0002100.2
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 557245 565997 +
4 domain predictions
1 GO term
LotjaGi6g1v0002100.3
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 558565 565566 +
4 domain predictions
1 GO term
LotjaGi6g1v0002100.4
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 558580 565566 +
4 domain predictions
1 GO term
LotjaGi6g1v0023300.1
n.a. Argonaute; TAIR: AT2G32940.1 Argonaute family protein; Swiss-Prot: sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16; TrEMBL-Plants: tr|K7M0M5|K7M0M5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0023300 LjG1.1_chr6 4343935 4353182 -
4 domain predictions
1 GO term
LotjaGi6g1v0023300.2
n.a. Argonaute; TAIR: AT2G32940.1 Argonaute family protein; Swiss-Prot: sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16; TrEMBL-Plants: tr|K7M0M5|K7M0M5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0023300 LjG1.1_chr6 4344057 4353148 -
4 domain predictions
1 GO term
LotjaGi6g1v0190900.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48703602 48712691 -
3 domain predictions
1 GO term
LotjaGi6g1v0190900.2
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48704175 48711341 -
3 domain predictions
1 GO term
LotjaGi6g1v0190900.3
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48704175 48711341 -
3 domain predictions
1 GO term
LotjaGi6g1v0190900.4
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48704175 48711484 -
3 domain predictions
1 GO term
LotjaGi6g1v0269600.1
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 LjG1.1_chr6 58406349 58420346 +
4 domain predictions
1 GO term
LotjaGi6g1v0269600.2
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 LjG1.1_chr6 58406481 58420451 +
4 domain predictions
1 GO term
LotjaGi6g1v0275900.1
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7IFV9|G7IFV9_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi6g1v0275900 LjG1.1_chr6 59274673 59278992 +
4 domain predictions
1 GO term
LotjaGi6g1v0275900.2
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7IFV9|G7IFV9_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi6g1v0275900 LjG1.1_chr6 59274681 59279024 +
4 domain predictions
1 GO term
LotjaGi6g1v0284000.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A; TrEMBL-Plants: tr|A0A1J7GZK6|A0A1J7GZK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284000 LjG1.1_chr6 60026428 60036559 +
4 domain predictions
1 GO term
LotjaGi6g1v0334400_LC.2
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12; TrEMBL-Plants: tr|A0A1D1Z031|A0A1D1Z031_9ARAE Protein argonaute 10; Found in the gene: LotjaGi6g1v0334400_LC LjG1.1_chr6 64893606 64897253 +
3 domain predictions
1 GO term
LotjaGi6g1v0334400_LC.6
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|I1LRB1|I1LRB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0334400_LC LjG1.1_chr6 64893606 64901040 +
3 domain predictions
1 GO term