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LotjaGi5g1v0309200.3

Overview

Field Value
Gene ID LotjaGi5g1v0309200
Transcript ID LotjaGi5g1v0309200.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:62741055..62747148) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCATTGAGGCAGATGAAAGAAGGGTCTGAGCAACACCTAGTGATCAAACCCCATTTGCAGAACCAGAACCCCATGTG TACTCCAGCTAAGAAGGTACCGAAAGCTACTACCCAAAATGGCCAAGGTCCATCACCACCTCAAGAAAACCATAGCCAAA CTTCACCTCACCCAAGGAACAAGGGAAGGAGAAGGGGCAGAGGAGGCAGAAAATGTGATCAAGGTGATGTTTTGATGAGG CCTAGTTGCAGGCCTTGCACTGCAACAAGTTCTTCTGCAAATGGAAATGTTCAAAATGGCTACACCTCTGGGAATGTAGA TATGGGTTTTCCTACTTCAAGCAAGTCTTTAAGCTTTGCTCGTAGACCTGGATTTGGACAAGTTGGGACAAAATGCATTG TGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTAAGATCCTTTTCATTGGTATTT AGTATTTACCATTCTACTGAAAGAGCTATTAAGTTAGATTTTTCTAAGTGGCATAACGATTGGGCCCTCTTTGGCAGCAT GCATTTAATTCATCCTGTGATTTTTCCTATTATAGGGGTTCTGCTTTTGCAGTCCTTTTCTTCTAGTGTCATTAATTGAG GCCTGAGGCTTTTGTTCCTATTGTTGCTTTTGCTTTAATTTAATTAATGCCTTTCTGTTATGTGTTGGTTTTACTTTGAA GGTTACTATTACCCCGGAAGTGTCTTCAAGAGCAGTAAATAGGTCCATTATAGCTGAACTTGTGAGGCTGTATAAAGAGT CTGACTTAGGGATGAGACTTCCTGCATATGATGGCAGGAAAAGTCTGTACACTGCAGGGCAGCTTCCATTTGCTTGGAGA GAATTTAAGATTAAGCTTGTAGATGAACAAGATAGAGTAAATGTCCCCAAGTAAGGATTTATTGTTCATAATCATTCAAA CATTTTCCCTTTTTTCTCAGTACATGTTTGGACAAACTTCTATAGTTGATTCTAAAGCCTAAATCAAGTCTGAGGAGGAG CTTGTGCCAGTAGCTTCTAAGTCTCATAATTGATTCTTATAAAAGAGAAAGGTGATCCAGATCAATTCATGAAGAAATAA ATAACACAAGATAAAATCATAATAATTTTGACTTATTTGAATTAGTTCAATTTCAATTGACACTTTGGCCATCTTTCAGA AGGGAAAGAGAGTACAATGTGGTGATAAAGTTTGTTGCTCGGGCAAACTTGCATCACTTAGGTCAGTTTCTAGCTGGTAA GCGTGCTGATGCACCGCAGGAGGCACTTCAAATTCTTGACATTGTTCTGAGAGAGCTGTCGAATAAGAGGTAGTGATAGT GATGAGAATCTGAAATTTTAAAATTAACAAGAAATGATAAATTGAATGAGAATATGAAGCTTAAGTTCTTGTTTATCTTA CGAAAACTGCATTTTCTAAAGGTATTGTCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTG GAGAGGGATTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGGTATA TTAGTTACTACATTAATTATATAGTATAAATAGTCTAATGAAACTACAATTCAACTTTTTCATTTCTCTTCACTTCTTGC ATTTTGCAGATATGGCATCTGCTGCATTCATTGAACCTCTTCCAGTAGTAGAGTTTGTTGGCCAACTATTAGCAAAAGAT GTGTTGTCAAGGCCGTTGTCAGATGCTGATCGCATTAAGGTACTTAGTTATATGGACATAGCTTACGGATTTCTTCTTCT ATGTTGTCAATATTAGTCAATTTATAGCGCTACTTTTTTTTTATGTCTAACAGATTAAGAAAGCCCTTAGAGGAGTTAAA GTTGAAGTAACACACAGAGGAAGTGTGAGAAGAAAATATCGTGTTTCTGGGTTGACTTCTCAACCAACAAGAGAACTTGT GTAAGTTGTTTTTCTAATTGTTCTCTTCCCACTAAAAATCAAAACAGTTATAATGATTTTCATTTAATCACTGTTTTTCT TTAGGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAA TATGCTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGTAGGGAAAGTTCCTGG TAGTTGAAGAACCATTCAATGTCATAATGTTTTTGTCTTATTCCCATGTGCTTTTGGTTTCCAGGCCTGCAAAATTGTTG AGGGGCAACGCTATACAAAGAGATTGAATGAGAAGCAAATTACTTCTCTGTTGAAAGTTACTTGCCAGAGACCTCGTGAT CGGGAAAATGACATTTTACAGGTATTCAATTTCACACTTTCACAATAAAGATTGTACTGACCTCTAATAGCAGAAAAATT AGGAAATGAAGGGTCATTAAGCTAGCATTCTTTTCCAGGATTTATTCTGGAAGTACTTAGCAAATTTATCTTCTAGTCAT CATGTGTATAACAATGTAGTAATTGGAATGTTTAGATAATGGTTCAAAACTTGTGAAGATCTTGTGGGGCTAATGTAATC TTAAATTACACTACTATGATTTTGTGATACTTGCTTGTGTGGGGGAGGGGTTATTAAGTTAGCTACATGCTGTTAATGTT GTGCATTCATATTGATTATTCATGTATTTATTTATTTTATTTTGTGTGGTGGTCATGGGGGTTATACAAGCAGACCGTTC AACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGATTGAATATCAGTGAAAAGCTAGCTTCTGTCGAAGCA CGGATTCTTCCTGCCCCATGGGTATTGTGCTTTTCCTTATTAAGATCTGGTTTGTCATATATCGAAAATGTTTATCTTTT TCCAACTGTTCACTGATTTAAGAGGCACTTCTAACTGCAGCTTAAATATCATGAAAGTGGGAAAGAGAAGAACTGTTTAC CCCAAGTTGGTCAGTGGAATATGATGAACAAGGTATCGTTTGTTGGCATTATATTTTTCTGTTCTATAGTAATTGTCAAA TGGAACTGTTAGTGCCCGAGTGTCTAGTTTAATATAACTTTGGCTGTAAAATTTTCTCATATTTCATCTATTCTTTTGCT ACTAGTCATATGCTAAACAACAGAAAAAAGAAAGTAAAATGATGTTATTATAAATGAATCCCTTTATAAGGTATCTGCTA GCCTTGTTATTTTCTGTGATAGCTTGTATTACTGATATCTTTTTCTCCTATTTCTTGAATGGCGCAGAAAATGATTAATG GAATGACTGTTAACCGGTGGGCATGCATAAATTTTTCACGGAGCGTGCAAGATAGTGTTGCTCGCACTTTCTGTAATGAG CTTGCTCAAATGTGTCAAGTATCTGGCATGGTAGTTATTACATTTTTTTAGGTGTTTGAAGTGCATAAAGAAATTTCTGG TACTCAATAACATGACTTTTTTCTTGTAGGAATTTAACCCAGAGCCTGTTATTCCCATCTACAATGCCAAGCCTGAGCAG GTGGTGAAAGCTTTGAAGCATGTTTACCATGTTTCGTCAAACAAAACTAAAGGAAAGGAATTGGAGCTGTTGTTAGCAAT ATTACCAGACAATAATGGGTCTCTCTATGGTAAGCAAACATAGGTTGATAATCAAGTCTGCAAGATTGTGCTATGTTATT AATCATTGATTGCTATTTGCTGGCTTGACAGAACGACGAAGATATATTCCAGCTTAAAATGCAGAATTTTCATTGAAATG ACTTGTGTTTTCAGGTGATCTCAAGCGTATATGTGAAACTGACCTGGGTTTAATTTCACAATGCTGTCTGACAAAGCATG TCTTTAAAATCACTAAACAGTACTTGGCTAATGTGTCTCTGAAGATCAACGTTAAGGTTTGTTTGCTCTCAATCACAGGA AATTGCATATTCCTGTGTAAGACATGGTTAAAAGTTTAGTATGAATTTCAGTTACTTGTTAGACAATTCCCCTCCCTTTT TTTCTCTGTTATTGCATGAATAATCTAATTTTTTTTAACAAATTCATGGCCACTATTTACCAAGTTTTGGCAAAATCAAA TTCATGATGTACTCATGTAATCTTATTTTTCATTAGTCAACTTTAGGCTTCCCTACTGTTTGAATATTCATGTTAAAATT GCTCACTTGTCATAAATGCTTCCAATAAGTAAATAGTGGTCTCCTTGTTGCAGATGGGAGGTAGAAACACTGTTCTTCTT GATGCTTTGAGCTGCAGGATACCATTGGTTAGTGACATACCAACCATAATTTTTGGAGCAGATGTCACCCACCCTGAAAA TGGAGAAGACTCTAGCCCCTCAATTGCAGCTGTACTTATCTAATCTATTTATCTTATTATCATTAATTTTTTAAAGCATT GCGTTAGTTAATTAGAGTTTCAGAAACTGATGTGTTATTCAATCTATAGGTTGTAGCATCCCAGGACTGGCCTGAAGTGA CGAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCAGGACCCT GTTCGCGGCACAGTTAGTGGTGGCATGATAAGGTAAAAATACTACGTACTTTAATTTTCTAATTCTGAATGTTGTTCTTG GTTGTGTGATGGGATCTCTTTGCAGTTTGTTTCAGTATTTCATTTTCGCACGTTCTTTTTGTGCAGAGACTTACTGGTTT CCTTTAGAAAGGCGACAGGACAAAAGCCACTACGAATTATATTTTACAGGTCCTTATGTTTAATTTATGATGCTAGATCA TCAGTGTATGTTTAATTTGAAGTCACCAGCGTGTTAACCGTAAAATTTTGAACAGGGATGGTGTAAGCGAGGGGCAATTT TACCAAGTATTACTTTATGAGTTGGACGCAATCCGGAAGGTCAGAGTCATTTACTTTCTGTTATGGAGTTATCATAAGTT TGTATTCTTTAAAATATGTTCTGATAAGAAATATCTATGCAGGCATGTGCGTCCTTGGAGCCAAACTATCAGCCTCCGGT AACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTATTCCCAAACAACCACAAGGACAGGAGCAGTACAGATAAGA GTGGGAACATAATGCCTGGTATGTTGAACATTCCTTAATGCTTATGTACACAAATGTGTTTTTAATAATGATTGTCAAAT AAAATTAAAGTCTTGTTATATATTGCCTTTCAGGGACTGTTGTTGATTCTAAAATCTGCCATCCAACGGAATTTGATTTT TATCTCTGCAGTCATGCTGGCATCCAGGTAGAAAATAGTTTTTAGTATGGTTCTGATCTGGGGACCAAAAGTGCAATTAA TTCTATTTGATTTTAGCATGGATGTTAAACATGAATCCAAAGTAAAACTTCCGTCTAAACCTTTGATTTTCTTAACTGTG AATACTGTGTTTCCATTACCGTGCAGGGTACTAGTCGACCTGCTCATTATCATGTTCTATGGGACGAAAACAACTTCACA GCAGATGGAATTCAGTCTTTGACCAACAATCTTTGTTATACATATGCGAGGTGTACACGCTCCGTGTCCGTTGGTAAGCC TATGTTTCAACTAGTATGCAGTTTTTCAGTTATTGCTCACAGTAATGAATCTTGAAGCCTTGCCTTACCCTTTATGACTA GTTCAAGAAGCTATGATGTTTCTAGTATTTACATCATGAGTGAGCTTTAACCTGATTATATTTATCTTTGTTGGAGTTTC AACTTGTTTCGGACAATTTAAAACTCAATTGGCTGAAAATCTAATCTTTTTGTGCAGTTCCTCCAGCATATTATGCACAT TTAGCAGCTTTTCGAGCCCGTTTCTATATGGAACCAGATATGCAAGAGAATGGCTCTTCAGGTGACGGTAACACTAGTAA CAGCTCCAAGGGGACACGAGTAGCTGGAGAGTGTGGTGTTAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTGA TGTTTTACTGTTAG 

CDS sequence (LotjaGi5g1v0309200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCATTGAGGCAGATGAAAGAAGGGTCTGAGCAACACCTAGTGATCAAACCCCATTTGCAGAACCAGAACCCCATGTG TACTCCAGCTAAGAAGGTACCGAAAGCTACTACCCAAAATGGCCAAGGTCCATCACCACCTCAAGAAAACCATAGCCAAA CTTCACCTCACCCAAGGAACAAGGGAAGGAGAAGGGGCAGAGGAGGCAGAAAATGTGATCAAGGTGATGTTTTGATGAGG CCTAGTTGCAGGCCTTGCACTGCAACAAGTTCTTCTGCAAATGGAAATGTTCAAAATGGCTACACCTCTGGGAATGTAGA TATGGGTTTTCCTACTTCAAGCAAGTCTTTAAGCTTTGCTCGTAGACCTGGATTTGGACAAGTTGGGACAAAATGCATTG TGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCCGGAAGTGTCT TCAAGAGCAGTAAATAGGTCCATTATAGCTGAACTTGTGAGGCTGTATAAAGAGTCTGACTTAGGGATGAGACTTCCTGC ATATGATGGCAGGAAAAGTCTGTACACTGCAGGGCAGCTTCCATTTGCTTGGAGAGAATTTAAGATTAAGCTTGTAGATG AACAAGATAGAGTAAATGTCCCCAAAAGGGAAAGAGAGTACAATGTGGTGATAAAGTTTGTTGCTCGGGCAAACTTGCAT CACTTAGGTCAGTTTCTAGCTGGTAAGCGTGCTGATGCACCGCAGGAGGCACTTCAAATTCTTGACATTGTTCTGAGAGA GCTGTCGAATAAGAGGTATTGTCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGAGAGG GATTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCT GCTGCATTCATTGAACCTCTTCCAGTAGTAGAGTTTGTTGGCCAACTATTAGCAAAAGATGTGTTGTCAAGGCCGTTGTC AGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTGAGAAGAA AATATCGTGTTTCTGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCA GTTGTTGAATACTTCCAAGAGATGTATGGTTTCACTATTCAATATGCTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAA GAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGGCAACGCTATACAAAGAGATTGAATGAGAAGCAAA TTACTTCTCTGTTGAAAGTTACTTGCCAGAGACCTCGTGATCGGGAAAATGACATTTTACAGACCGTTCAACATAATGCT TATGACCAAGATCCTTATGCAAAGGAATTTGGATTGAATATCAGTGAAAAGCTAGCTTCTGTCGAAGCACGGATTCTTCC TGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAGAAGAACTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACA AGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGCATAAATTTTTCACGGAGCGTGCAAGATAGTGTTGCTCGC ACTTTCTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAACCCAGAGCCTGTTATTCCCATCTACAA TGCCAAGCCTGAGCAGGTGGTGAAAGCTTTGAAGCATGTTTACCATGTTTCGTCAAACAAAACTAAAGGAAAGGAATTGG AGCTGTTGTTAGCAATATTACCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGTATATGTGAAACTGACCTGGGT TTAATTTCACAATGCTGTCTGACAAAGCATGTCTTTAAAATCACTAAACAGTACTTGGCTAATGTGTCTCTGAAGATCAA CGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTTTGAGCTGCAGGATACCATTGGTTAGTGACATACCAACCA TAATTTTTGGAGCAGATGTCACCCACCCTGAAAATGGAGAAGACTCTAGCCCCTCAATTGCAGCTGTTGTAGCATCCCAG GACTGGCCTGAAGTGACGAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTGTACAA AACTTGGCAGGACCCTGTTCGCGGCACAGTTAGTGGTGGCATGATAAGAGACTTACTGGTTTCCTTTAGAAAGGCGACAG GACAAAAGCCACTACGAATTATATTTTACAGGGATGGTGTAAGCGAGGGGCAATTTTACCAAGTATTACTTTATGAGTTG GACGCAATCCGGAAGGCATGTGCGTCCTTGGAGCCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAAAGACA CCATACTCGGTTATTCCCAAACAACCACAAGGACAGGAGCAGTACAGATAAGAGTGGGAACATAATGCCTGGGACTGTTG TTGATTCTAAAATCTGCCATCCAACGGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGACCT GCTCATTATCATGTTCTATGGGACGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACCAACAATCTTTGTTATAC ATATGCGAGGTGTACACGCTCCGTGTCCGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGTTTCT ATATGGAACCAGATATGCAAGAGAATGGCTCTTCAGGTGACGGTAACACTAGTAACAGCTCCAAGGGGACACGAGTAGCT GGAGAGTGTGGTGTTAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTGATGTTTTACTGTTAG 

Protein sequence (LotjaGi5g1v0309200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPLRQMKEGSEQHLVIKPHLQNQNPMCTPAKKVPKATTQNGQGPSPPQENHSQTSPHPRNKGRRRGRGGRKCDQGDVLMR PSCRPCTATSSSANGNVQNGYTSGNVDMGFPTSSKSLSFARRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVS SRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLVDEQDRVNVPKREREYNVVIKFVARANLH HLGQFLAGKRADAPQEALQILDIVLRELSNKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMAS AAFIEPLPVVEFVGQLLAKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKS VVEYFQEMYGFTIQYAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNA YDQDPYAKEFGLNISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVAR TFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVVKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLG LISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDALSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQ DWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYEL DAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHKDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP AHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSSGDGNTSNSSKGTRVA GECGVKPLPALKENVKRVMFYC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 91 91 -
MobiDBLite 16 55 40 -
PANTHER 99 982 884 0.0
PANTHER 99 982 884 0.0
Pfam 131 265 135 2.9E-31
SMART 274 326 53 4.6E-24
Pfam 275 324 50 1.1E-19
Gene3D 320 445 126 4.1E-37
SUPERFAMILY 321 481 161 4.55E-53
CDD 326 440 115 5.53554E-39
ProSiteProfiles 327 441 115 33.196
SMART 331 463 133 2.4E-4
Pfam 343 457 115 4.0E-25
Pfam 467 513 47 8.8E-15
CDD 485 935 451 0.0
Pfam 524 601 78 4.7E-13
Gene3D 532 682 151 2.2E-58
SUPERFAMILY 607 937 331 2.0E-86
ProSiteProfiles 615 936 322 57.181
SMART 615 936 322 5.8E-125
Pfam 616 935 320 1.3E-115
Gene3D 685 982 298 2.6E-117
MobiDBLite 940 960 21 -
MobiDBLite 942 958 17 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0309200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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