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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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  • IPR003661
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We have found 79 results. Now displaying 2 of 2 with 50 rows per page. This search has taken 6.463s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0379900.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87654085 87670051 -
4 domain predictions
2 GO terms
LotjaGi2g1v0379900.2
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87658002 87669871 -
4 domain predictions
2 GO terms
LotjaGi3g1v0054100.1
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632820 5638974 -
4 domain predictions
2 GO terms
LotjaGi3g1v0054100.2
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632920 5639127 -
4 domain predictions
2 GO terms
LotjaGi3g1v0054100.3
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9M7M1|ETR1_PRUPE Ethylene receptor; TrEMBL-Plants: tr|K7LB32|K7LB32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
4 domain predictions
2 GO terms
LotjaGi3g1v0054100.4
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|A0A1J7HIG6|A0A1J7HIG6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
4 domain predictions
2 GO terms
LotjaGi3g1v0084800_LC.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|G7JXI9|G7JXI9_MEDTR Osmosensor histidine kinase; Found in the gene: LotjaGi3g1v0084800_LC LjG1.1_chr3 9561114 9561912 -
4 domain predictions
2 GO terms
LotjaGi4g1v0129800.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|K7MGY5|K7MGY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129800 LjG1.1_chr4 18987983 18994802 +
4 domain predictions
2 GO terms
LotjaGi4g1v0366900.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74675995 74684564 +
4 domain predictions
2 GO terms
LotjaGi4g1v0366900.2
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676046 74684422 +
4 domain predictions
2 GO terms
LotjaGi4g1v0366900.3
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676694 74683363 +
4 domain predictions
2 GO terms
LotjaGi4g1v0459800.1
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061838 83069902 -
4 domain predictions
2 GO terms
LotjaGi4g1v0459800.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061938 83069826 -
4 domain predictions
2 GO terms
LotjaGi4g1v0459800.3
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061985 83069668 -
4 domain predictions
2 GO terms
LotjaGi5g1v0050100.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8435089 8444095 +
4 domain predictions
2 GO terms
LotjaGi5g1v0050100.2
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8436374 8442779 +
4 domain predictions
2 GO terms
LotjaGi5g1v0182400.1
n.a. Ethylene receptor; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400 LjG1.1_chr5 46462080 46466555 +
3 domain predictions
2 GO terms
LotjaGi5g1v0182400.2
n.a. Ethylene receptor; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400 LjG1.1_chr5 46463053 46466053 +
3 domain predictions
2 GO terms
LotjaGi5g1v0206300.1
n.a. Ethylene receptor like-protein; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|A0A0B2Q4A5|A0A0B2Q4A5_GLYSO Protein EIN4; Found in the gene: LotjaGi5g1v0206300 LjG1.1_chr5 50864567 50868817 +
4 domain predictions
2 GO terms
LotjaGi5g1v0235100.1
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323062 54330218 -
3 domain predictions
2 GO terms
LotjaGi5g1v0235100.2
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328628 -
3 domain predictions
2 GO terms
LotjaGi5g1v0235100.3
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328849 -
3 domain predictions
2 GO terms
LotjaGi5g1v0235100.4
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328859 -
3 domain predictions
2 GO terms
LotjaGi6g1v0007200.1
n.a. Ethylene receptor family protein; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0007200 LjG1.1_chr6 1465201 1469916 -
2 domain predictions
2 GO terms
LotjaGi6g1v0007200.2
n.a. Ethylene receptor family protein; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0007200 LjG1.1_chr6 1465263 1469302 -
2 domain predictions
2 GO terms
LotjaGi6g1v0210900.1
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50829966 50836297 -
4 domain predictions
2 GO terms
LotjaGi6g1v0210900.2
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50831797 50836297 -
4 domain predictions
2 GO terms
LotjaGi6g1v0210900.3
n.a. Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|V7AY23|V7AY23_PHAVU Phytochrome; Found in the gene: LotjaGi6g1v0210900 LjG1.1_chr6 50832024 50836033 -
4 domain predictions
2 GO terms
LotjaGi6g1v0258900.1
n.a. Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 LjG1.1_chr6 57180524 57188840 +
4 domain predictions
2 GO terms