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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0210900 |
| Transcript ID | LotjaGi6g1v0210900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytochrome; TAIR: AT4G18130.1 phytochrome E; Swiss-Prot: sp|P55004|PHYE_IPONI Phytochrome E; TrEMBL-Plants: tr|N0DK27|N0DK27_LOTJA Phytochrome E; Found in the gene: LotjaGi6g1v0210900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50831797..50836297) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAATCAAAACCAGAAAGCTAAAACCAAACAGACATGGCAAAATATCAGGCATGTTGTGTGATTTTGATACGTGATTC AATGATTTTAAGCATGACATTAGCACACAAAACATGACAAAGACGTGTGTGTGCAAGTGCAACCCATGACATAGAATATT AAGGAAGCAGCAATAGCAACATTCCACACAGAAAACACAAGACACTGATATAGCAAACGAGAAAGGTGGAAAAGGAAGTA CTTTGAATTGTGGAAGCGTTGAGAATGAGTTCTGGAAGCAGAGGGAACTTGAAGGACTCAAGCTTTACTAGTAACATGAA CACCGCCACAACCAGCAACAAGGACAAGGCACTTGCTCAGTTCAGTGCAGATGCTGAGAATCTTGCAGAGTTTGAGCAAT CTGGTGCCTCTGACAAATCATTTGACTACTCAAAAACAGTTCTTGATTCTCCCAGGTTAGTGTCTGAAGAGAAAATGACT GCATATTTGTCTAAAATCCAAAGGGGTGGTCTTATCCAATCCTTTGGTTGTATGCTAGCAATTGCAGAATCCACTTTTAC AATCATTGGATACAGTGAGAATTGCTTTCAATTGTTAGGCTTAGAGAGGCATATTGATTCAAAACAGCAGCTTCTGGGTC TGATTGGGGTTGATGCCACAACCCTCTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGTCTTCCAGGGAAATT TCACTTTTGAACCCAATTTGGGTCTATACAAGGACAACCCAGAAGCCATTTTATGCTATACTCCACAGGATTGATGTTGG GGTTGTGATTGATTTGGAGCCAGCAAGGTCCAGTGACCCTGCATTATCACTTGCTGGGACAGTTCAATCACAGAAGCTGG CTGTTAGAGCAATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGTCTGCTTTGTGACGCGGTTGTTGAGGAAGTG CAGAAGTTTACTGGATATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGACCATGGTGAAGTTGTGTCTGAGATTAG GAGGTCAGATTTAGAGCCTTACTTGGGTTTGCATTATCCTGCCACAGATATCCCACAAGCTGCACGCTTCTTGTTCAAGC AGAACCGCGTAAGGATGATTTGTGATTGCCAAGCGAATGCGGTTAAGGTGATTCAGAGTGAAGATTTAATGCAACCTCTT TACTTGGTGAACTCAACCCTCAGGGCACCACAAGGTTGTCACTCACAGTACATGGCTAACATGGGCTCAATTGCTTCTCT GGTGATGGCTGTCATAGTCAATGGAAATGACACAACAAGGCTTTGGGGATTGCTGGTTTGTCATCACACTTCACCGCGCT ATGTGCCTTTCCCAGTCCGTTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGCCTGCAGCTTTACATGGAGATTCAACTG GCAGCACAAATGGCAGAGAAGAGAATTCTTAAAACACAAACTTTGCTGTGTGACATGCTCCTGCGCGATGCACCGTTTGG GATTGTGACTCAATCCCCGAGTATCATGGACCTTGTGAAGTGTGATGGTGCTGCCTTGTACTATGATGGTAAGTGTTGGT TGTTAGGCACAACCCCAACTGAATCACAGGTGAAGGACATTGCAGAATGGCTACTTGTTAATCATGGAGACTCAACAGGT TTGAGCACAAATAGTTTGGCTGAGGCGGGTTATCCGGGCGCTACTTCGCTGGGGGATCCAGTTTGTGGCATGGCCACAGC AAGAATCAATTCAAGACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAATGAAATGGGGAGGAGCCAAGCATC ATCCAGAGGATAAGGATGATGGAGGGAAAATGAACCCAAGATCATCCTTTAAAGCTTTTCTTGAAATAGTCAAAAGAAAA AGTTTGCCTTGGGAAGTGTCAGAGATTAATGCTATTCACTCATTACAACTAATCATGAGAGATTCATTCCAAGACACACA GAATTTCGGTCCAACGACTCTAAATTTTATACAGAAAATTGGCACTGCAATTGAAAGGAAGGGTGAACTCAGTTCAGTAG CGTGTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCCATTTTTGGGGTTGATTCAGATGGCCTAATCAATGGATGG AATGTACAAACTTCTGAATTGACAGGTCTGCAGGCTAGTGAAGCTATAGGAAAATCCCTAGTAAATGAAGTAGTACACGC GGATTCGCGCGAAACTCTTACAAATGTCCTAAGCAGAGCCTTGCAAGGTAAATCAGTTCTTGTAAATGGAGTTTTGACTG TATTACTAATTCAATTATTTTTCATGATTCATTGGCTGAATAAACTGTTCTGTAGTATGAATCTTATAAGGCAATGGACA AACAAAAACCTCATTTTTCTAGATTACTGATGTCCTCTAAACCAGCTAGAATGTAAAAATTAAATGACTAGTGTTATATA ATTGAAGAATATGCACGGTAAAGGGTGTGTTAGGCCTGCGACATCTAACGTTAAACTGACCATATCTATGCCTCAAGTGA TCCATATATGCTATAGCCGACCTCATTTAGTGAGATAAAACTTTTGTTTGATATTGTATATTGTTGTTGTTGTGTATGAA GAAAAGTTGAGTACCCTTAGAATATGTATTTATGACTGATGTTTTTTCAGGTGAGGAGGAAAAAAATGTTGAGTTGAAAA TAAAACACTTTGGGATTGATCAAAAAAAAGTTGTTTATCTGAGGGCCAATGCCTGCACTAGTAGGGACTACACAAATGCC ATTGTTGGGGTGTGCTTTGTAGGTCAAGACATAACTCACGAGAAAGTGGTTCTAGACAAGTTCATCAAGTTGGAAGGTGA TTACAAAGCCATCATACAGAGTCTCAATCCATTAATTCCACCCATTTTCGCTTCTGATGAGAATGCATGCTGCTCTGAAT GGAATGCAGCCATGGAAAAGCTAACTGGTTGGAAGAGAGAAGAAGTCATAGGAAAATTACTTCCTGGGGAGATCTTTGGG AACTTTTGTCAATTGAAAGGTCAAGATACACTCACTAACTTTATGATTTTACTGTATCGCGGACTAAGTGGTCAAGATTC CGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAAAATTTGTTGAGGTTTATATAACAGCAAGCAAGAGGAACGATG CGGCTGGGAATATGATAGGCTGTTTCTGCTTCTTGCAGATCGTGTCGCGAGATCCGAGCCAGCCCTCTGATGGACACAGG TCTGAAGGCAGAGAAAGCATTTATGAATCTAAGGAGTTAGCTTATATTCTACAAGAGATGAAGAACCCTTTGAACGGTTT AAGGTTCACACACAAACTTCTGGAAAACACGGCGGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGTGATGCATGTG AAAGACAGATCATGGCAATTATTGAGAATTCAGATTTAGAAAGTATAAATGAAGGGTGAGAAGTCTTGTTGCATTATAAT AGGCATTACTGATGTTTAAAATATCATTTTTTTTTCTTATGTTCCATGTTTACATAGACAAGCATGTCATAATACTGACT AAGTTTTTTTTTCTTTTTTTTTGGCATTTTATGCTAATGCTAGCAGCACTTTGCAGCTAAACATGGAAGAATTTCTTCTG GGAAATATTTTAGATGCCATTGTGAGTCAAGTGATGATGTTGATAAAAGGAAAAAACTTGCAGCTGTTTCATGAAATTCC GGAGGAAATCAAAACACTTGCTCTATATGGTGATCAAATTAGGCTGCAGGTGGTGTTGTCTGATTTTTTGCTTAATGTAG TTAGCCACACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCCGGTTTGAAAATAATACAGGATGGCAATGAG TTTATCCATCTCAAGTTCAGGTACACAAACCAAGCATTTGTTAATTTGGTTGCTAATACTTTTCCCTCTAGTGATGTTAT TGCCCATTTTACTAATTTTTTTTCATGCAGAATGACCCATTCTGGTCAAGGTCTCCCTTCTGCTGTTCTTCATGATATGT TTGAAGGAGGGAATCAGTGGACTACACAGGAAGGTCTAGGGCTATATATGTCGAGGAAAATTCTCAGTAGGATGAATGGT CATGTCCAATATGTAAGAGAACAAAATAAGTGCTATTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAG GAATTTGCAAGCAAAGATAAGCATGTCAAGTTAGCTTTCTTCTCTACATTGGCATATATGGGAAGTGCTCATTTCAACAT AGCTTTGAAGATTGACATATATCAAAGCAATTTTCTATATATCTGGCTGTATACTGCAGCTGAAAAGTTACTACAGTAAA ATAGGAAATGAGCTATGAATAGTGTTCCCCTATTGTTTTGAATGCTATTAATTTAATCTAATTAAGGTGCAATCTTGTAA TATTGTCACCAGAAATCCAGA
CDS sequence (LotjaGi6g1v0210900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTGGAAGCAGAGGGAACTTGAAGGACTCAAGCTTTACTAGTAACATGAACACCGCCACAACCAGCAACAAGGA CAAGGCACTTGCTCAGTTCAGTGCAGATGCTGAGAATCTTGCAGAGTTTGAGCAATCTGGTGCCTCTGACAAATCATTTG ACTACTCAAAAACAGTTCTTGATTCTCCCAGGTTAGTGTCTGAAGAGAAAATGACTGCATATTTGTCTAAAATCCAAAGG GGTGGTCTTATCCAATCCTTTGGTTGTATGCTAGCAATTGCAGAATCCACTTTTACAATCATTGGATACAGTGAGAATTG CTTTCAATTGTTAGGCTTAGAGAGGCATATTGATTCAAAACAGCAGCTTCTGGGTCTGATTGGGGTTGATGCCACAACCC TCTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGTCTTCCAGGGAAATTTCACTTTTGAACCCAATTTGGGTC TATACAAGGACAACCCAGAAGCCATTTTATGCTATACTCCACAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCAGC AAGGTCCAGTGACCCTGCATTATCACTTGCTGGGACAGTTCAATCACAGAAGCTGGCTGTTAGAGCAATTTCAAGGCTGC AATCTCTTCCTGGGGAAGATATTGGTCTGCTTTGTGACGCGGTTGTTGAGGAAGTGCAGAAGTTTACTGGATATGATAGG GTTATGGTTTATAAGTTTCATGAGGATGACCATGGTGAAGTTGTGTCTGAGATTAGGAGGTCAGATTTAGAGCCTTACTT GGGTTTGCATTATCCTGCCACAGATATCCCACAAGCTGCACGCTTCTTGTTCAAGCAGAACCGCGTAAGGATGATTTGTG ATTGCCAAGCGAATGCGGTTAAGGTGATTCAGAGTGAAGATTTAATGCAACCTCTTTACTTGGTGAACTCAACCCTCAGG GCACCACAAGGTTGTCACTCACAGTACATGGCTAACATGGGCTCAATTGCTTCTCTGGTGATGGCTGTCATAGTCAATGG AAATGACACAACAAGGCTTTGGGGATTGCTGGTTTGTCATCACACTTCACCGCGCTATGTGCCTTTCCCAGTCCGTTATG CTTGTGAGTTCCTAATGCAGGCTTTTGGCCTGCAGCTTTACATGGAGATTCAACTGGCAGCACAAATGGCAGAGAAGAGA ATTCTTAAAACACAAACTTTGCTGTGTGACATGCTCCTGCGCGATGCACCGTTTGGGATTGTGACTCAATCCCCGAGTAT CATGGACCTTGTGAAGTGTGATGGTGCTGCCTTGTACTATGATGGTAAGTGTTGGTTGTTAGGCACAACCCCAACTGAAT CACAGGTGAAGGACATTGCAGAATGGCTACTTGTTAATCATGGAGACTCAACAGGTTTGAGCACAAATAGTTTGGCTGAG GCGGGTTATCCGGGCGCTACTTCGCTGGGGGATCCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAGACATTTCTT GTTCTGGTTCAGGTCTCACACTGCTAAGGAAATGAAATGGGGAGGAGCCAAGCATCATCCAGAGGATAAGGATGATGGAG GGAAAATGAACCCAAGATCATCCTTTAAAGCTTTTCTTGAAATAGTCAAAAGAAAAAGTTTGCCTTGGGAAGTGTCAGAG ATTAATGCTATTCACTCATTACAACTAATCATGAGAGATTCATTCCAAGACACACAGAATTTCGGTCCAACGACTCTAAA TTTTATACAGAAAATTGGCACTGCAATTGAAAGGAAGGGTGAACTCAGTTCAGTAGCGTGTGAAATGGTGAGATTAATTG AGACAGCAACAGTCCCCATTTTTGGGGTTGATTCAGATGGCCTAATCAATGGATGGAATGTACAAACTTCTGAATTGACA GGTCTGCAGGCTAGTGAAGCTATAGGAAAATCCCTAGTAAATGAAGTAGTACACGCGGATTCGCGCGAAACTCTTACAAA TGTCCTAAGCAGAGCCTTGCAAGGTGAGGAGGAAAAAAATGTTGAGTTGAAAATAAAACACTTTGGGATTGATCAAAAAA AAGTTGTTTATCTGAGGGCCAATGCCTGCACTAGTAGGGACTACACAAATGCCATTGTTGGGGTGTGCTTTGTAGGTCAA GACATAACTCACGAGAAAGTGGTTCTAGACAAGTTCATCAAGTTGGAAGGTGATTACAAAGCCATCATACAGAGTCTCAA TCCATTAATTCCACCCATTTTCGCTTCTGATGAGAATGCATGCTGCTCTGAATGGAATGCAGCCATGGAAAAGCTAACTG GTTGGAAGAGAGAAGAAGTCATAGGAAAATTACTTCCTGGGGAGATCTTTGGGAACTTTTGTCAATTGAAAGGTCAAGAT ACACTCACTAACTTTATGATTTTACTGTATCGCGGACTAAGTGGTCAAGATTCCGAGAAGTTACCATTTGGATTTTTTGA TAGAAATGGAAAATTTGTTGAGGTTTATATAACAGCAAGCAAGAGGAACGATGCGGCTGGGAATATGATAGGCTGTTTCT GCTTCTTGCAGATCGTGTCGCGAGATCCGAGCCAGCCCTCTGATGGACACAGGTCTGAAGGCAGAGAAAGCATTTATGAA TCTAAGGAGTTAGCTTATATTCTACAAGAGATGAAGAACCCTTTGAACGGTTTAAGGTTCACACACAAACTTCTGGAAAA CACGGCGGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGTGATGCATGTGAAAGACAGATCATGGCAATTATTGAGA ATTCAGATTTAGAAAGTATAAATGAAGGCTAA
Protein sequence (LotjaGi6g1v0210900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSGSRGNLKDSSFTSNMNTATTSNKDKALAQFSADAENLAEFEQSGASDKSFDYSKTVLDSPRLVSEEKMTAYLSKIQR GGLIQSFGCMLAIAESTFTIIGYSENCFQLLGLERHIDSKQQLLGLIGVDATTLFTPPSGASLAKAVSSREISLLNPIWV YTRTTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGTVQSQKLAVRAISRLQSLPGEDIGLLCDAVVEEVQKFTGYDR VMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCQANAVKVIQSEDLMQPLYLVNSTLR APQGCHSQYMANMGSIASLVMAVIVNGNDTTRLWGLLVCHHTSPRYVPFPVRYACEFLMQAFGLQLYMEIQLAAQMAEKR ILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGKCWLLGTTPTESQVKDIAEWLLVNHGDSTGLSTNSLAE AGYPGATSLGDPVCGMATARINSRHFLFWFRSHTAKEMKWGGAKHHPEDKDDGGKMNPRSSFKAFLEIVKRKSLPWEVSE INAIHSLQLIMRDSFQDTQNFGPTTLNFIQKIGTAIERKGELSSVACEMVRLIETATVPIFGVDSDGLINGWNVQTSELT GLQASEAIGKSLVNEVVHADSRETLTNVLSRALQGEEEKNVELKIKHFGIDQKKVVYLRANACTSRDYTNAIVGVCFVGQ DITHEKVVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMEKLTGWKREEVIGKLLPGEIFGNFCQLKGQD TLTNFMILLYRGLSGQDSEKLPFGFFDRNGKFVEVYITASKRNDAAGNMIGCFCFLQIVSRDPSQPSDGHRSEGRESIYE SKELAYILQEMKNPLNGLRFTHKLLENTAVSENQKQFLDTSDACERQIMAIIENSDLESINEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 39 | 943 | 905 | 0.0 | – | |
| PANTHER | 39 | 943 | 905 | 0.0 | – | |
| Pfam | 73 | 187 | 115 | 4.7E-38 | ||
| Gene3D | 78 | 323 | 246 | 6.9E-166 | – | |
| SUPERFAMILY | 78 | 189 | 112 | 3.05E-22 | ||
| PRINTS | 135 | 157 | 23 | 9.2E-103 | ||
| Gene3D | 193 | 551 | 359 | 6.9E-166 | ||
| SUPERFAMILY | 200 | 386 | 187 | 1.62E-53 | – | |
| SMART | 220 | 400 | 181 | 2.5E-22 | ||
| Pfam | 220 | 390 | 171 | 8.3E-33 | ||
| ProSiteProfiles | 220 | 380 | 161 | 66.648 | ||
| PRINTS | 235 | 254 | 20 | 9.2E-103 | ||
| PRINTS | 320 | 341 | 22 | 9.2E-103 | ||
| Gene3D | 395 | 568 | 174 | 6.9E-166 | ||
| SUPERFAMILY | 398 | 577 | 180 | 4.51E-56 | – | |
| Pfam | 403 | 578 | 176 | 5.6E-54 | ||
| PRINTS | 420 | 440 | 21 | 9.2E-103 | ||
| PRINTS | 505 | 524 | 20 | 9.2E-103 | ||
| PRINTS | 538 | 556 | 19 | 9.2E-103 | ||
| ProSiteProfiles | 605 | 676 | 72 | 22.304 | ||
| Gene3D | 607 | 726 | 120 | 3.1E-16 | – | |
| SMART | 607 | 674 | 68 | 1.9E-5 | ||
| Pfam | 608 | 722 | 115 | 1.1E-23 | ||
| PRINTS | 608 | 624 | 17 | 9.2E-103 | ||
| SUPERFAMILY | 611 | 718 | 108 | 3.01E-14 | ||
| TIGRFAM | 612 | 726 | 115 | 7.1E-11 | ||
| CDD | 616 | 722 | 107 | 3.31017E-7 | ||
| PRINTS | 627 | 642 | 16 | 9.2E-103 | ||
| PRINTS | 700 | 717 | 18 | 9.2E-103 | ||
| PRINTS | 720 | 740 | 21 | 9.2E-103 | ||
| SMART | 737 | 806 | 70 | 0.081 | ||
| ProSiteProfiles | 738 | 783 | 46 | 14.707 | ||
| Pfam | 738 | 857 | 120 | 1.9E-21 | ||
| CDD | 749 | 857 | 109 | 5.10735E-8 | ||
| Gene3D | 751 | 863 | 113 | 2.5E-11 | – | |
| SUPERFAMILY | 752 | 854 | 103 | 6.81E-10 | ||
| SMART | 879 | 943 | 65 | 6.6E-8 | ||
| Pfam | 883 | 943 | 61 | 7.7E-8 | ||
| CDD | 884 | 934 | 51 | 2.15287E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorelay sensor kinase activity | Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Biological process | Detection of visible light | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. | ||
| Biological process | Protein-chromophore linkage | The covalent or noncovalent attachment of a chromophore to a protein. |
Expression pattern of LotjaGi6g1v0210900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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