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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0235100 |
| Transcript ID | LotjaGi5g1v0235100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:54323402..54328849) extracted from Lotus japonicus Gifu genome v1.2.
TTCATGATTTTTTCATCTTGAAAAAGTGTTGGAAATTTCTCCCCCTTCTTCTTGAGTTGTTATATGAAAAGGATTCTGAA TTTTGGCTTTCAAGTAAAGTAATAAGAGGCTTAAGTAGTTGTGTAGCATAACATATTGTTAAGAGTTCTTGTATGAATTA TGATCCAAATTAACTTAGTCATCTTATTTTTATCATTCCATGTACAGTTGGCTGATCCAAAATGTCTTCATCAAGGCCTA GCCAATCGTCCAACAATTCAGGGAGATCAAGACATAGTGCTAGGGTTATTGCTCAGACCACTGTAGATGCAAAAATCCAT GCCAATTTTGAGGAGTCTGGTAGTTCCTTCGACTACTCCAGTTCGGTACGTGCCTCCGGTACGGCTGATGCAGACCATCA ACCAAAGTCCAACAAAGTAACAACAGCTTACCTGCATCACATACAGAGAGGCAAGCTGATCCAGCCTTTTGGTTGCTTGC TGGCCTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAATGCACCTGAAATGCTCACCATGGTGAGCCATGCT GTCCCAAGTGTTGGTGAACACCCTGCCCTTGGCATTGACACTGACATAAGAACTATTTTCACCGCGCCAAGTGCTTCTGC ATTACAGAAGGCGCTGGGATTTGCCGAGGTTACACTTCTTAACCCCATCCTTGTTCATTGCAAGACTTCTGGGAAACCCT TTTATGCAATCATCCATCGTGTCACGGGTAGTTTGATAATTGACTTTGAGCCGGTCAAGCCGTATGAAGTTCCCATGACT GCAGCAGGTGCTTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTTTGCCTAGTGGGAGCATGGA AAGGCTTTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATGGCTTATAAATTTCATGAGG ATGATCATGGAGAGGTGATTGCTGAGATAACAAAGCCCGGGCTAGAGCCATATCTGGGTTTACACTATCCAGCCACTGAT ATTCCTCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGGATGATAGTTGATTGTCATGCAAAACAAGTGAAGGT TCTTATAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCAACCTTAAGGGCTCCTCACAGTTGCCATTTGCAAT ACATGGCAAACATGGATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAACGATGAAGACGGGGATGGTTCT GATTCAGTTCAGCCACAGAAGAGAAAAAGACTCTGGGGTTTGGTAGTTTGCCACAACACTTCTCCTAGATTTGTTCCTTT TCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAAGTGTTTGCCATCCATGTGAACAAAGAAATAGAATTAGAATGTCAGA TTCTTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGCGCCCCTAGGCATTCTAACA CAGAGTCCAAATTTAATGGATCTAGTGAAATGTGATGGCGCTGCCCTCTTGTATAAAAACAAGGTATGGATGTTAGGAGT AACACCTAGTGAACTCCATATAAGAGACATAGCTTCATGGCTGTCTAACTACCACACAGATTCCACAGGTTTGAGTACAG ATAGCTTGTCTGATGCAGGGTTCCCAGGGGCCCTTTCTCTTGGGGATCTTGTGTGTGGAATGGCAGCTGTTAGAATAACT CCGAAAGACGTAGTATTCTGGTTTCGGTCGCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGAGA ACAGGATGATGGTAAGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAGGGCAAGGAGCTCACCAT GGAAGGACTATGAAATGGATGCTATTCATTCATTGCAATTAATACTGAGGAATGCATTCAAAGATACAGATAGTATGGAT ATAAACACAACTGCAATAGACACAAGATTAAGTGATCTGAAAATTGAAGGGATGCAGGAACTGGAAGCAGTGACAAGTGA GATGGTTAGGTTAATTGAAACTGCAACAGTGCCTATTTTGGCAGTCGATATTGATGGGCTGGTCAATGGGTGGAATATAA AAATTGCTGAGTTGACAGGTCTTCCGGTTGGTGAAGCTATTGGAAAGCATCTACTCACACTTGTTGAGGATTGTTCAACT GATAGAGTAAAGAAGATGCTTGACTTGGCACTTTCGGGTATGTCTTTTTTCTTTCGTAATCTTATCCTTATATAAGCACT TCTCTTTTCTCTGTTTATCAAGCCTTAGCATTCATGATCAGAAGTTACAGATGTGTGTGTGTGTGTGACTATTTAATTTA ATCAACTTTGCTAACCCATCCATGAATTTTGTATTGATGAAGAATTGTGAGAAGTATGTCTTGTTGACAATTTCATTGAA TTCTGTGGCCCTACAATACTTGAGTAGGAAAGGAACACTCAAGGAGTTGTGTGGTCTTCTTTTATTTTGGGGGGTCTTTG TGTGATTTAATCCACTAGGCATGATTTGCAATTGGAATTATGACTGTTTAATACATATGGCTGAACCTCATTTAATAGGA GAATGTTTTTGTTCCTGTTGTGCGATGGTTGTGGTGGCAATGGAAAGTGTTGGTGCAATTTCTCTAACACAATGGGATAA CATTCTTCAAACCTGCTTTTGATTTCCAAATTGTTGATTTGTTTTGTTCTGTTGCAATGTAATTAGGTGAAGAAGAGAAG AACGTCCAATTCGAGATCAAAACACACGGGTCTAAGATGGAATCTGGTCCTATTAGTTTGGTAGTTAATGCTTGTGCAAG CAGGGATCTTCGAGAAAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATTACTGCTCAGAAGACTGTAATGGACAAAT TCACCCGAATTGAAGGCGATTACAAGGCAATTGTTCAGAACCCCAATCCACTAATCCCCCCGATATTTGGCACAGATGAA TTTGGCTGGTGTTGTGAGTGGAATCCAGCCATGACAAAGTTAACTGGATGGAAGCGAGAAGAGGTGATGGATAAAATGCT TTTAGGAGAAGTTTTTGGGACACACATGGCTGCTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTGC TTAATAAAGCCATGACTGGTTCGGAAACGGAGAAGGTCGGCTTCGGTTTCTTTGCTCGGAGTGGCAAGTATGTAGAATGC CTTCTTTCTGTGAGTAAGAAATTGGACGTAGAAGGTCTAGTTACAGGGGTCTTCTGCTTCTTGCAGCTAGCTAGCCCAGA GCTGCAACAAGCATTACACATTCAGCGCCTATCCGAACAAACTGCTCTGAAAAGACTGAAGGCATTAACTTATATGAAAA GGCAGATCAGGAATCCATTGTCTGGGATTGTATTTTCACGGAAAACGTTGGAGGGTACTGATTTGGGAATAGAACAAAAA CGACTTGTCCATACTAGTGCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTCGATGACTCGGATCTTGACAGCATCATGGA CGGGTACGATATCTGTCAATGTTGTTCTTTTTTCTCTTTGAATTCATGTCATGTGAAGCATTAAGTGTTGATCAATTATG TCGCATATTTAAGCCTAGAAGATCCATTTGGAAACTTCATTGAAGCTCAATAATAGAAAGTTAACACCATGCTTGAGTCT TAACTCCACAAAACAAAGGTGACAACATGCTTTGATATGCAGGTTTTTTTATTTTTTATTTTAAGAAGTTGTCTAAAGTT TAAGATGAAAAGAATAATAATAACTACAAGAAATTCTGTGTGTGCTATAGCGATAGCAATTTGATTTTCATTGTAGGGGT TAAGACTTTGACTTTCCTATTTTATCTAGTGAATACTTGCTGAATTTATATCCCGACTTTGAGAAGCTGATTCCTATAAC AAGGAATTTTTTTTCCTGGTAAAAGCATAGTTTTTTTCCAAACTAGAAATTGTATTTCCTTGTATCTGAAGATTAGCGTG CATCTAAAGCATGTGATCACTTGGTAACCTTTTATCAATTTTTGGGAGGAGAAGGGAATGTAAGTTAGTTGGAGTTGACC AATTTGACATGCTTGAGGACATAAATAGGAATTAGGTTGTCTTAAGCGATTTAAGTCTCCTTTTGTTAGTTTGCTGAAAG TCATGTTTTTGTTATTCTGATGGTTCATGTTATCTGCATCATGTTTTGGCAGGGAATACCAATAAAGCATATGTTTGATA ATTAAAACTTTGCAACACGGAAACTGTGGATATTTACTTCTGATTCGCACTGTGCTTTCCAAGTCAATCTATAGTGCTAG ATTAGTTTGATTTTGTGAAATTATGAACGCAGGACCAGAGATACAAAAATCTTTGAGATTATTTGGCTTGATGTATTTGC TAACAGTTTATATACTTGTTTTTTCTGAACAGCTACTTGGATCTTGAGATGGCTGAATTCACTCTCCAAGATGTACTGAT TACCTCCCTAAGTCAAATCATGGCAAGGAGTAGTGCGAGAGGTATCCGAATAGTCAATGATGTCGCTGAGGAGATCATGG TGGAAATCTTATATGGTGATAGTCTTAGGCTTCAGCAGGTCTTAGCCGACTTTTTACTGATTTCCATCAATTGTACACCA AATGGAGGTCAGGTTGTTGTTGCAGCCTCTCTAACCAAGGAACAGCTAGGGAAATCTGTCCATCTTGCTAATTTGGAGCT CAGGTAAATTTGGAGTTTCATATTCATGCATTTAAAACTCCCTATAAGTGGTTTATCTGGATCTACTTGTATTCCCGCTA CCCTGTGGGGGTGAGAGCATAAGTTCGAATCCTGGAAAAATAATTTCTTGGAGGGACAACTATAGTTTCCCGACCGGGGG AAAAACATCCAGGTTAAAGACAATAAAAAGTGATGAAATCTAATTGGATGCCCGTGTAAAAATCATTTACACTGTCGGTG TATAGTTAATCTCATGAACTAATGTGTGATGTCAAGATAAATCCTTGTTCTCTTGTGCTAGGGAACTACCTTAGAAACAA AAGAAACTTTGCATTATTTTTATCCTATGAAGAGGAGAAGAAACTGCATTGTGAATCTTATTGACAGCTAAATTTGGCTT TAAACTAATAAGTGGTTATTTTTTGCTATTTATGCAGCATAACACATGGCGGTAGCGGGGTGCCGGAAGCATTGCTGAAC CAGATGTTTGGAAATGATGGGCTAGAATCAGAGGAGGGTATTAGCCTGCTCATCAGCAGAAAGCTGCTAAAGCTCATGAG TGGAGATGTTCGTTATCTAAGGGAAGCAGGCAAATCATCGTTTATCCTATCGGTTGAACTTGCTGCAGCACATAAGTTGA AAGCTTAA
CDS sequence (LotjaGi5g1v0235100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCATCAAGGCCTAGCCAATCGTCCAACAATTCAGGGAGATCAAGACATAGTGCTAGGGTTATTGCTCAGACCAC TGTAGATGCAAAAATCCATGCCAATTTTGAGGAGTCTGGTAGTTCCTTCGACTACTCCAGTTCGGTACGTGCCTCCGGTA CGGCTGATGCAGACCATCAACCAAAGTCCAACAAAGTAACAACAGCTTACCTGCATCACATACAGAGAGGCAAGCTGATC CAGCCTTTTGGTTGCTTGCTGGCCTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAATGCACCTGAAATGCT CACCATGGTGAGCCATGCTGTCCCAAGTGTTGGTGAACACCCTGCCCTTGGCATTGACACTGACATAAGAACTATTTTCA CCGCGCCAAGTGCTTCTGCATTACAGAAGGCGCTGGGATTTGCCGAGGTTACACTTCTTAACCCCATCCTTGTTCATTGC AAGACTTCTGGGAAACCCTTTTATGCAATCATCCATCGTGTCACGGGTAGTTTGATAATTGACTTTGAGCCGGTCAAGCC GTATGAAGTTCCCATGACTGCAGCAGGTGCTTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGGTTGCAATCTT TGCCTAGTGGGAGCATGGAAAGGCTTTGTGATACAATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGATAGGGTGATG GCTTATAAATTTCATGAGGATGATCATGGAGAGGTGATTGCTGAGATAACAAAGCCCGGGCTAGAGCCATATCTGGGTTT ACACTATCCAGCCACTGATATTCCTCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGGATGATAGTTGATTGTC ATGCAAAACAAGTGAAGGTTCTTATAGATGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCAACCTTAAGGGCTCCT CACAGTTGCCATTTGCAATACATGGCAAACATGGATTCAATTGCTTCCCTGGTTATGGCAGTTGTAGTCAATGACAACGA TGAAGACGGGGATGGTTCTGATTCAGTTCAGCCACAGAAGAGAAAAAGACTCTGGGGTTTGGTAGTTTGCCACAACACTT CTCCTAGATTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAAGTGTTTGCCATCCATGTGAACAAAGAA ATAGAATTAGAATGTCAGATTCTTGAGAAGAATATCCTGCGCACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGC GCCCCTAGGCATTCTAACACAGAGTCCAAATTTAATGGATCTAGTGAAATGTGATGGCGCTGCCCTCTTGTATAAAAACA AGGTATGGATGTTAGGAGTAACACCTAGTGAACTCCATATAAGAGACATAGCTTCATGGCTGTCTAACTACCACACAGAT TCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCAGGGGCCCTTTCTCTTGGGGATCTTGTGTGTGGAAT GGCAGCTGTTAGAATAACTCCGAAAGACGTAGTATTCTGGTTTCGGTCGCACACTGCTGCAGAAATCCGATGGGGTGGTG CAAAGCATGAACCTGGAGAACAGGATGATGGTAAGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTG AGGGCAAGGAGCTCACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTGCAATTAATACTGAGGAATGCATTCAA AGATACAGATAGTATGGATATAAACACAACTGCAATAGACACAAGATTAAGTGATCTGAAAATTGAAGGGATGCAGGAAC TGGAAGCAGTGACAAGTGAGATGGTTAGGTTAATTGAAACTGCAACAGTGCCTATTTTGGCAGTCGATATTGATGGGCTG GTCAATGGGTGGAATATAAAAATTGCTGAGTTGACAGGTCTTCCGGTTGGTGAAGCTATTGGAAAGCATCTACTCACACT TGTTGAGGATTGTTCAACTGATAGAGTAAAGAAGATGCTTGACTTGGCACTTTCGGGTGAAGAAGAGAAGAACGTCCAAT TCGAGATCAAAACACACGGGTCTAAGATGGAATCTGGTCCTATTAGTTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTT CGAGAAAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATTACTGCTCAGAAGACTGTAATGGACAAATTCACCCGAAT TGAAGGCGATTACAAGGCAATTGTTCAGAACCCCAATCCACTAATCCCCCCGATATTTGGCACAGATGAATTTGGCTGGT GTTGTGAGTGGAATCCAGCCATGACAAAGTTAACTGGATGGAAGCGAGAAGAGGTGATGGATAAAATGCTTTTAGGAGAA GTTTTTGGGACACACATGGCTGCTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCATTGTGCTTAATAAAGC CATGACTGGTTCGGAAACGGAGAAGGTCGGCTTCGGTTTCTTTGCTCGGAGTGGCAAGTATGTAGAATGCCTTCTTTCTG TGAGTAAGAAATTGGACGTAGAAGGTCTAGTTACAGGGGTCTTCTGCTTCTTGCAGCTAGCTAGCCCAGAGCTGCAACAA GCATTACACATTCAGCGCCTATCCGAACAAACTGCTCTGAAAAGACTGAAGGCATTAACTTATATGAAAAGGCAGATCAG GAATCCATTGTCTGGGATTGTATTTTCACGGAAAACGTTGGAGGGTACTGATTTGGGAATAGAACAAAAACGACTTGTCC ATACTAGTGCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTCGATGACTCGGATCTTGACAGCATCATGGACGGCTACTTG GATCTTGAGATGGCTGAATTCACTCTCCAAGATGTACTGATTACCTCCCTAAGTCAAATCATGGCAAGGAGTAGTGCGAG AGGTATCCGAATAGTCAATGATGTCGCTGAGGAGATCATGGTGGAAATCTTATATGGTGATAGTCTTAGGCTTCAGCAGG TCTTAGCCGACTTTTTACTGATTTCCATCAATTGTACACCAAATGGAGGTCAGGTTGTTGTTGCAGCCTCTCTAACCAAG GAACAGCTAGGGAAATCTGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGGCGGTAGCGGGGTGCCGGAAGCATT GCTGAACCAGATGTTTGGAAATGATGGGCTAGAATCAGAGGAGGGTATTAGCCTGCTCATCAGCAGAAAGCTGCTAAAGC TCATGAGTGGAGATGTTCGTTATCTAAGGGAAGCAGGCAAATCATCGTTTATCCTATCGGTTGAACTTGCTGCAGCACAT AAGTTGAAAGCTTAA
Protein sequence (LotjaGi5g1v0235100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSRPSQSSNNSGRSRHSARVIAQTTVDAKIHANFEESGSSFDYSSSVRASGTADADHQPKSNKVTTAYLHHIQRGKLI QPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPALGIDTDIRTIFTAPSASALQKALGFAEVTLLNPILVHC KTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM AYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTLRAP HSCHLQYMANMDSIASLVMAVVVNDNDEDGDGSDSVQPQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKE IELECQILEKNILRTQTLLCDMLMRDAPLGILTQSPNLMDLVKCDGAALLYKNKVWMLGVTPSELHIRDIASWLSNYHTD STGLSTDSLSDAGFPGALSLGDLVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFLEVV RARSSPWKDYEMDAIHSLQLILRNAFKDTDSMDINTTAIDTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDIDGL VNGWNIKIAELTGLPVGEAIGKHLLTLVEDCSTDRVKKMLDLALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDL RENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGE VFGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQ ALHIQRLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLEGTDLGIEQKRLVHTSAQCQRQLSKILDDSDLDSIMDGYL DLEMAEFTLQDVLITSLSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTK EQLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGKSSFILSVELAAAH KLKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 1124 | 1124 | 0.0 | ||
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 27 | 1122 | 1096 | 0.0 | – | |
| PANTHER | 27 | 1122 | 1096 | 0.0 | – | |
| MobiDBLite | 40 | 61 | 22 | - | – | |
| Pfam | 69 | 185 | 117 | 1.8E-38 | ||
| SUPERFAMILY | 74 | 186 | 113 | 8.89E-24 | ||
| Gene3D | 76 | 321 | 246 | 3.8E-162 | – | |
| PRINTS | 133 | 155 | 23 | 1.6E-109 | ||
| Gene3D | 195 | 562 | 368 | 3.8E-162 | ||
| SUPERFAMILY | 198 | 398 | 201 | 4.58E-53 | – | |
| SMART | 218 | 411 | 194 | 1.9E-10 | ||
| ProSiteProfiles | 218 | 391 | 174 | 63.035 | ||
| Pfam | 218 | 401 | 184 | 1.3E-34 | ||
| PRINTS | 233 | 252 | 20 | 1.6E-109 | ||
| PRINTS | 318 | 339 | 22 | 1.6E-109 | ||
| ProSitePatterns | 318 | 327 | 10 | - | ||
| Gene3D | 406 | 579 | 174 | 3.8E-162 | ||
| SUPERFAMILY | 409 | 587 | 179 | 4.9E-58 | – | |
| Pfam | 414 | 588 | 175 | 1.0E-55 | ||
| PRINTS | 431 | 451 | 21 | 1.6E-109 | ||
| PRINTS | 516 | 535 | 20 | 1.6E-109 | ||
| PRINTS | 549 | 567 | 19 | 1.6E-109 | ||
| Gene3D | 611 | 749 | 139 | 2.2E-14 | – | |
| ProSiteProfiles | 617 | 687 | 71 | 17.539 | ||
| SMART | 619 | 685 | 67 | 1.1E-6 | ||
| PRINTS | 620 | 636 | 17 | 1.6E-109 | ||
| Pfam | 620 | 734 | 115 | 1.2E-20 | ||
| SUPERFAMILY | 623 | 730 | 108 | 2.36E-12 | ||
| TIGRFAM | 624 | 740 | 117 | 2.7E-9 | ||
| CDD | 628 | 734 | 107 | 3.52624E-8 | ||
| PRINTS | 639 | 654 | 16 | 1.6E-109 | ||
| PRINTS | 712 | 729 | 18 | 1.6E-109 | ||
| PRINTS | 732 | 752 | 21 | 1.6E-109 | ||
| SMART | 749 | 818 | 70 | 1.0E-4 | ||
| ProSiteProfiles | 750 | 802 | 53 | 13.387 | ||
| Pfam | 750 | 872 | 123 | 1.1E-23 | ||
| CDD | 761 | 872 | 112 | 9.46527E-7 | ||
| Gene3D | 763 | 875 | 113 | 3.9E-7 | – | |
| SUPERFAMILY | 764 | 870 | 107 | 7.5E-10 | ||
| SMART | 894 | 959 | 66 | 4.0E-5 | ||
| CDD | 899 | 949 | 51 | 0.00461927 | ||
| ProSiteProfiles | 901 | 1120 | 220 | 33.441 | ||
| Gene3D | 902 | 955 | 54 | 1.1E-12 | – | |
| SUPERFAMILY | 955 | 1110 | 156 | 2.17E-10 | ||
| Gene3D | 956 | 1109 | 154 | 1.1E-12 | ||
| CDD | 1005 | 1116 | 112 | 9.04492E-49 | – | |
| SMART | 1006 | 1118 | 113 | 4.3E-8 | ||
| Pfam | 1006 | 1116 | 111 | 3.3E-8 | ||
| Coils | 1119 | 1124 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorelay sensor kinase activity | Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Biological process | Detection of visible light | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. | ||
| Biological process | Red, far-red light phototransduction | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. | ||
| Molecular function | Photoreceptor activity | The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. | ||
| Biological process | Protein-tetrapyrrole linkage | The covalent linking of a tetrapyrrole to a protein. | ||
| Biological process | Protein-chromophore linkage | The covalent or noncovalent attachment of a chromophore to a protein. | ||
| Molecular function | Protein homodimerization activity | Interacting selectively and non-covalently with an identical protein to form a homodimer. |
Expression pattern of LotjaGi5g1v0235100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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