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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005135
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We have found 173 results. Now displaying 4 of 4 with 50 rows per page. This search has taken 8.352s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi5g1v0115900.2
n.a. Carbon catabolite repressor 4-like protein; TAIR: AT3G58580.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2; TrEMBL-Plants: tr|I1L2J3|I1L2J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0115900 LjG1.1_chr5 23618264 23623641 -
2 domain predictions
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LotjaGi5g1v0135000.1
n.a. DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT2G41460.1 apurinic endonuclease-redox protein; Swiss-Prot: sp|P45951|ARP_ARATH DNA-(apurinic or apyrimidinic site) lyase, chloroplastic; TrEMBL-Plants: tr|K7K9G6|K7K9G6_SOYBN DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi5g1v0135000 LjG1.1_chr5 31929476 31938027 +
2 domain predictions
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LotjaGi5g1v0169900.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; TAIR: AT3G63240.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8GTS0|IP5P4_ARATH Type I inositol polyphosphate 5-phosphatase 4; TrEMBL-Plants: tr|V7BGL3|V7BGL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0169900 LjG1.1_chr5 43487190 43492728 -
2 domain predictions
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LotjaGi5g1v0169900.2
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; TAIR: AT3G63240.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8GTS0|IP5P4_ARATH Type I inositol polyphosphate 5-phosphatase 4; TrEMBL-Plants: tr|V7BGL3|V7BGL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0169900 LjG1.1_chr5 43487423 43492749 -
2 domain predictions
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LotjaGi5g1v0169900.3
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; TAIR: AT3G63240.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8GTS0|IP5P4_ARATH Type I inositol polyphosphate 5-phosphatase 4; TrEMBL-Plants: tr|V7BGL3|V7BGL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0169900 LjG1.1_chr5 43488782 43492687 -
2 domain predictions
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LotjaGi5g1v0169900.4
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; TAIR: AT3G63240.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8GTS0|IP5P4_ARATH Type I inositol polyphosphate 5-phosphatase 4; TrEMBL-Plants: tr|A0A151RLD8|A0A151RLD8_CAJCA Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; Found in the gene: LotjaGi5g1v0169900 LjG1.1_chr5 43488998 43492001 -
2 domain predictions
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LotjaGi5g1v0169900.5
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2; TAIR: AT3G63240.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q8GTS0|IP5P4_ARATH Type I inositol polyphosphate 5-phosphatase 4; TrEMBL-Plants: tr|V7BGL3|V7BGL3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0169900 LjG1.1_chr5 43488998 43492008 -
2 domain predictions
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LotjaGi5g1v0202600.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase; TAIR: AT1G65580.1 Endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|Q84W55|IP5PF_ARATH Type II inositol polyphosphate 5-phosphatase 15; TrEMBL-Plants: tr|I1NII6|I1NII6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0202600 LjG1.1_chr5 50276917 50302150 +
2 domain predictions
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LotjaGi5g1v0208900_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT3G24255.4 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|A0A151RYW3|A0A151RYW3_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi5g1v0208900_LC LjG1.1_chr5 51091385 51096141 +
2 domain predictions
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LotjaGi5g1v0219100_LC.2
n.a. LINE-1 reverse transcriptase like; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0219100_LC LjG1.1_chr5 52545312 52549906 -
2 domain predictions
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LotjaGi5g1v0219100_LC.3
n.a. Transposon TX1 uncharacterized; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0219100_LC LjG1.1_chr5 52545312 52549906 -
2 domain predictions
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LotjaGi5g1v0260000.1
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G48030.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P0AAW3|YBHP_ECO57 Uncharacterized protein YbhP; TrEMBL-Plants: tr|A0A0B2SP53|A0A0B2SP53_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0260000 LjG1.1_chr5 56853464 56858636 +
2 domain predictions
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LotjaGi5g1v0329800.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase; TAIR: AT2G43900.1 Endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|O80560|IP5PC_ARATH Type I inositol polyphosphate 5-phosphatase 12; TrEMBL-Plants: tr|G7KJV0|G7KJV0_MEDTR Type I inositol-1,4,5-trisphosphate 5-phosphatase; Found in the gene: LotjaGi5g1v0329800 LjG1.1_chr5 64686566 64693218 +
2 domain predictions
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LotjaGi5g1v0329800.2
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase; TAIR: AT1G05630.1 Endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|O80560|IP5PC_ARATH Type I inositol polyphosphate 5-phosphatase 12; TrEMBL-Plants: tr|A0A0S3RA92|A0A0S3RA92_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0329800 LjG1.1_chr5 64686757 64692639 +
2 domain predictions
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LotjaGi6g1v0035400_LC.1
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT4G01480.1 pyrophosphorylase 5; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|F4NCL3|F4NCL3_BETVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0035400_LC LjG1.1_chr6 6731443 6735652 -
2 domain predictions
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LotjaGi6g1v0039500_LC.2
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT4G36050.3 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|A0A151QNL1|A0A151QNL1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0039500_LC LjG1.1_chr6 7633793 7638403 +
2 domain predictions
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LotjaGi6g1v0079800_LC.2
n.a. Transposon TX1 uncharacterized; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein; TrEMBL-Plants: tr|A0A0B2R0Q2|A0A0B2R0Q2_GLYSO LINE-1 reverse transcriptase like; Found in the gene: LotjaGi6g1v0079800_LC LjG1.1_chr6 15228264 15230056 +
2 domain predictions
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LotjaGi6g1v0160400_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT3G24255.4 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|A0A0B2R0Q2|A0A0B2R0Q2_GLYSO LINE-1 reverse transcriptase like; Found in the gene: LotjaGi6g1v0160400_LC LjG1.1_chr6 44141350 44152964 +
2 domain predictions
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LotjaGi6g1v0191000_LC.1
n.a. LINE-1 reverse transcriptase like; TAIR: AT1G43760.1 DNAse I-like superfamily protein; Swiss-Prot: sp|O00370|LORF2_HUMAN LINE-1 retrotransposable element ORF2 protein; TrEMBL-Plants: tr|A0A0B2R0Q2|A0A0B2R0Q2_GLYSO LINE-1 reverse transcriptase like; Found in the gene: LotjaGi6g1v0191000_LC LjG1.1_chr6 48733182 48737761 -
2 domain predictions
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LotjaGi6g1v0303300.1
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT3G21530.4 DNAse I-like superfamily protein; Swiss-Prot: sp|P0AAW3|YBHP_ECO57 Uncharacterized protein YbhP; TrEMBL-Plants: tr|I1MFA3|I1MFA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0303300 LjG1.1_chr6 62092080 62096191 +
2 domain predictions
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LotjaGi6g1v0303300.2
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT3G21530.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q48F78|KDSA_PSE14 2-dehydro-3-deoxyphosphooctonate aldolase; TrEMBL-Plants: tr|I1M188|I1M188_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0303300 LjG1.1_chr6 62092080 62096191 +
2 domain predictions
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LotjaGi6g1v0303300.3
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT3G21530.1 DNAse I-like superfamily protein; Swiss-Prot: sp|P0AAW3|YBHP_ECO57 Uncharacterized protein YbhP; TrEMBL-Plants: tr|I1MFA3|I1MFA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0303300 LjG1.1_chr6 62092269 62095863 +
2 domain predictions
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LotjaGi6g1v0319200_LC.1
n.a. Endonuclease/exonuclease/phosphatase family protein; TAIR: AT2G41460.1 apurinic endonuclease-redox protein; Swiss-Prot: sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase; TrEMBL-Plants: tr|A0A151QNL1|A0A151QNL1_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0319200_LC LjG1.1_chr6 63620816 63625562 +
2 domain predictions
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