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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0115900 |
| Transcript ID | LotjaGi5g1v0115900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carbon catabolite repressor 4-like protein; TAIR: AT3G58580.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2; TrEMBL-Plants: tr|I1L2J3|I1L2J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0115900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23618264..23623641) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTGACCGTGCTGCGGGTGCACCTGCCTTCCGATATTCCCATTGTTGGCTGCGAGCTCACGCCTTACGTTCTCATTCG CCGCCCCGATACCAACATTAACAACGATGATGTTCCTGAAACCGCTCCCGTTGGTGGCCATTTCTTGCGATACAAGTGGT TCGTTCGTGCTCTTTTGCTTTTTCTTTTGTTAGTCTCTGCTTGATTGTTATGGTTTTTCAGCTAGGTTACTTGTGTGTTT CATTCTTGGGTAATGGTTCTATTCATTTTATGTATTTGTTTTCATTTCAATGATTGAAATTTTTGAAACTCTATGCACAT GTGTAATGCGAGGTTAAAGAAACACAAATTTGGTATGAGAGGAACTAAAGCTCATGTGAATTGGCTGAATTTTTAAGTTT TAAGTGATTTAACAAGTAACAGCCACTTCGTGTTTGGCGCGTTTTCGAGCATCGGGATATAATAGAATGTGGGCCTGCCT TCTAATTCACTTTTTTTTTTTCTTCCCTTATTGATAATTCAAGTGATTGGGTAGTTATTGATAGCGCGCGAAGCGCTGTC GCGTAGCGGACCCCTGTCGCGATGGGATCGTGGCCGCGAAATCCGGCTATTCGCGATCAATAGCGGCTTTCACTTTTATG TGATTTCATTTTTGGGGGGTCATTCGCGACAGGCCGCGTTCTGCGATTGACTACTATGGGTTCATATATATTGTTTTAAT TGCTTATATTGAATTGCCTTGATTAAGCAGTCTTGTGTGGCTTTTTTATTTAGTGTTGGTCTTCTCCATGTCACTGTTAT TTGTGGGGTAATGTGAGTTAAGGACTTAAGGTATACATATGTTTTGTCTGTATCTACCTGTATAGGTGTAGAATTATACT TATGAAGACAGCCTTGGTGAAATGGTTTGATTTGCTACTGGGTGACTAGGAGGGTCACAAATTCGGGTTGTGGAATCAGT CTCTAGCAAATGCAAAATGTGTGGTTTCCTATAATAGTAGACCCATAACAAGTCCAACCATTCCCTGGACCTTGATATGG CACGAGCTTTATAACATCCCCTGTATATCTGTACTTGTAGAGGTGACTGTGTTACTACTTATTGACACTTGTTTGGGGGA CTGCACCAGAGTCAAATAGTTTTTGGAGTTCTTTCGGGTGCTAAGATATGCCCATTTATGCAAAACTCTATGATTAAAGG ACGCAGAACTTTTTACAAGTGTCTCACGTTTATAGTTCTTTTGTGTTTTGTGCTATCATGGTGTATTTACATGCAATCGA ATGGGAAACTGGGGACAGATATAACTGAAGTATTATCCGTGCGGAGTGTTATATTTGAAACTGTCTCATGCATGCTATGA GTTTGTCTTAGGATGTGATGCATAAGTATAATTCGAAAGTTTTACAGATGATAGGTCGTGCTTGTAGCAGTTTTATATTA AGGTTCAAATTCCACATTTTAACCCCTTTCCTTCATGTTTTGCTGTTATGTTCTGCTTTTTTAATTGTTCACTTATGATT GATGCACATATTTGTTAGGTCATGGTTATATTGGGTAGATGAAAGATTAAATTGATCCCAAATTTGCTGCCTTATGTGCT TTTCTATTGGTCTGATTTATAAACTGGACTTTTAATGTTGTTTACACTACAACCTTTGGCCCTTGTTTTTGGTAGGTATC GTGTACATAGTGATAAAAAGGTCGCTGTCTGTAGCATACATCCATCTGAGCAGGCCACTCTGCAGTGCTTAGCTTGTACT AAGGCCAACATACCTGTTTCCAAAAGTTACCATTGCACCACCAAATGTTTCTCAAATGCATGGCAGCATCATCGTGTCTT ACATGAACGTGCAGCAAATGCTGCTAATGAAAATGGAAATGAAGAGGAGGAAGTATTTGGGCGCTTTAATAGTTCTGGTT CAGGGGTAATCAATTCCAACTTGTCTGCCTCTGCTTTAAGTGCTAGCTTGACAAATGGGTTTGCAGCACCTCTGTATCCA GCAGCTGTCCCAAAAAGACTTGGTGGTGAAAGTTGGCATGAAGTCGGACGATCCAAGACTTATATCCCAACTGCTGATGA CATTGGTCATGTTCTTAAGTTTGAATGTGCTGTAGTTGATGCAGAGACAAAGTTGCCTGTTGGACATGTGAACACTATAC TAACTTCGCATGTCATTCATGCTCCCTCTCCCATTCCACGGCGAATGATACGTGTTGATGGCACGGGGCATTTAGATGCA AATGGGCGTCAGTCATCTTCAGGAACTTTTACTATTCTGTCATACAATATATTGTCTGAAGCCTGTGCCTCAAATGCTCT GTATAATTATTGCCCTCCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAGTTTGTTACGAGAAATTGTTGGTTACCGTG CAGATATTATCTGTCTTCAGGAGGTACGTTAACATGATCTTGGTTATTGTTTTGGTGGTTGAAAAACTTGATTTAATAAC CTGGCTCTTCATCTTATGTCAATGGGATTGGTGTTAAATTAATTGTTATTTTATTTCAAAATTTTGAAGTCATCTTTTAA GTTCTATAGCAGTTGGTTTTTAACAAGACATGATTTCGCAATTGGGGGAACAAAGCATATCTACAAGTGGTAGCTTATTC TAAGATTTCAAAACTTAAACAAACTTCACTCTAACTTCCATTATGTGGAATTGTGTGCATTTTTTTTTGGCGGGGGCTGT GGCGGGGGGGGGGGGGGCGGGGAGGGACGAAGGCAAAATTTGAGGGTTATTTGGGCAGTTTGAGTTATATTCTTTAGTCC ATTATCCTTTCACTTAGAAATATGATTTGTTTGTGTATTGTTATGGCTTCTGTTCAGATAACGGACAACCTTTTCTCCTG CAGGTTCAAAGCGACCATTATGATGAGTATTTTGCTCCTGAACTGGACAAACATGGCTACAATGGTCTTTTCAAGAGAAA AACAACTGAGGTTGTTGCAATATTTCTGTCCTTGTGGCTTGTGGTCATAAAATTATTTTTTGGTGTTAACCTGTTTACTG TGGGATTTCAGGTATCTAATGGAAACACCAACACAATTGATGGTTGTGCGACATTTTTCCGTAGAGACAGATTCTCACAT GTGAAAAAATATGAGGTTGGGAACGGATATTTTGCATTTGATTAGTTCAAATATGGTTGTACACAAATATAATGTGTGCT TGCATGCAGGTTGAATTTAATAAGGCTGCTCAGTCTTTAACAGATGCTATGGTTCCAACTGCTCAGAAGAAAATTGCCTT GAGTCGGCTGGTTAAGGTGGCTTATTTCAAGTTTCAACAAATATTAAAATTGACTTTCACTTTTGAGAGAAAAATGATTG TCTCGCCTCTTGTGTGTCTGTTGCTGACCTAAACTTCTTTGAATTCTTAGGACAATGTTGCACTAATAGTGGTTCTAGAA GCAAAAGCTAACAATCAGGGAGTTGATAATCCTGGGAAAAAACAGCTTTTTTGTGTGGTAAGCTACTAAGCTCTTTTATG TTGCTGTTATTTATGGCCTTTAGTTGATTTTTTTTGTTTATGTCTTCATGGTGCATGATGGATGGTATATTATATTCAGT GTTTGATTTTGGTTGTGTATGCCCTTTGTTTATTGTTCCCCAGTACCTTGATTGTAATTGCATTATCTGTCGAATACTAG AGGGAGCCTTACCTTGCGTCATGCTTCATGGTTGTTGATTTCTTAAGTACACACACAGACACACATAATGTCTATATGTA TGAATATGTGTAATGTAGGCAGTCTTGGGTTGAATGATGTTTTTCCCTGGTGACAGCAGTGGCTTCTTATTTTGCTGTTG GTTTTTTAATCTGGTGTAAAATCTCTATCATACAGGTCCTGAGGCTCCTTTTCATATTAGCTCTAAAATCTCAATTAGAA AGGACCTAGTTAGATGTTTGTTTTAAGTGTTCCTTGAAACTCAAAATTTTGATGTTCCTATAAGAAAGATATGCTATTTC TTTTTGTATTCTTCTATTAACTTGTATATTGACCCTGGAGAGTCTAGTGCCATGCTTCATGGTTGTTGATTTCTTAATTA CACACACACACATAATGTCTGTATGTATTAATATGTATTATGTAGGTAGTCTTGGGTTAATGATGTTTTCCCTGGTGACT ACAGTGACTTCTTATTTTGCTTTGGTTTTTTATCTGGTGTAAAACCTCTGTATCGTACAGATCCTGAGGTTCCTTTTCAT ATTAGCTCTAGAGTCTCAATTAGAAAAGACCAAGTTAGATGTTTTTTTTAAGTGTTTCTTGAAGCTCAAAATTTTGATCT TCCTATAAGAAAGATATGCTGTTTCTCCCATATCCCTGCCCCCATTTTTAGGTATACGAAAATTCTTTTTGAGTATCCTT CTATTAACTTGTATATTGACCCTGGACTTTAGGCAAATACACATGTAAACGTACAACACGATTTAAAAGATGTCAAACTC TGGCAGGTAAGTTATTTCTTTGGTTTGTTCTATTGAATTGTTTGTTTTTAGCATAAGAGATACTAATTTTCTTCCCCAAT TTTAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATAGCTGCAAGCGCAGATATCCCCATGTTGGTTTGTGGAGATTTT AATTCAGTTCCAGGAAGGTTTGATGACTTCTCTCCTTCTTAATTTTGTTTTTGATATTTAGCAATGGTCTTGTATTAAGT ATCAGTACTGTGTGTGTATAAACGTTATTCTGAACTTTGTTACAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAG ATCCGTCACATCCTGATTTAGCAGTTGACCCACTTAATATTTTACACCCTCACAGCAAGTTGGTTCATCAGTTACCACTG GTAATATATTCATTGAAGCGCATCCCTTAAAAGAATAATTATTTAAATTGTGTTTTTATTCATTTTTGTTATGTACTTGT ATCAGTTTTTTGTTTGATTTAATTTATTATGTAACTTTAGGTCAGTGCATACTCATCTTTTGCAAGAACGGTTGGCCATG GATTTGAGCAGCATAAAAGGAGACTGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGC ACTCTAGATTACATATTTTACACAGGTGAGCTGTCTTGCAGTGTTATATCTTTTTGATAGATTTAATATATCGGTCACTT TTACGACCTGCTGTGGCTTTTGTTTTCAGCGGATTCATTGGTTGTGGAGTCATTGTTAGAGTTATTGGATGAGGAGAGTT TGAGGAAGGACACTGCACTTCCCTCACCCGAATGGCCCTCAGATCATATAGCTCTTTTAGCTGAGTTTCGCTGCACTAGG AATAAATCTAGACGTTGA
CDS sequence (LotjaGi5g1v0115900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGACCGTGCTGCGGGTGCACCTGCCTTCCGATATTCCCATTGTTGGCTGCGAGCTCACGCCTTACGTTCTCATTCG CCGCCCCGATACCAACATTAACAACGATGATGTTCCTGAAACCGCTCCCGTTGGTGGCCATTTCTTGCGATACAAGTGGT ATCGTGTACATAGTGATAAAAAGGTCGCTGTCTGTAGCATACATCCATCTGAGCAGGCCACTCTGCAGTGCTTAGCTTGT ACTAAGGCCAACATACCTGTTTCCAAAAGTTACCATTGCACCACCAAATGTTTCTCAAATGCATGGCAGCATCATCGTGT CTTACATGAACGTGCAGCAAATGCTGCTAATGAAAATGGAAATGAAGAGGAGGAAGTATTTGGGCGCTTTAATAGTTCTG GTTCAGGGGTAATCAATTCCAACTTGTCTGCCTCTGCTTTAAGTGCTAGCTTGACAAATGGGTTTGCAGCACCTCTGTAT CCAGCAGCTGTCCCAAAAAGACTTGGTGGTGAAAGTTGGCATGAAGTCGGACGATCCAAGACTTATATCCCAACTGCTGA TGACATTGGTCATGTTCTTAAGTTTGAATGTGCTGTAGTTGATGCAGAGACAAAGTTGCCTGTTGGACATGTGAACACTA TACTAACTTCGCATGTCATTCATGCTCCCTCTCCCATTCCACGGCGAATGATACGTGTTGATGGCACGGGGCATTTAGAT GCAAATGGGCGTCAGTCATCTTCAGGAACTTTTACTATTCTGTCATACAATATATTGTCTGAAGCCTGTGCCTCAAATGC TCTGTATAATTATTGCCCTCCATGGGCTCTTTCTTGGCCATATCGGAGGCAAAGTTTGTTACGAGAAATTGTTGGTTACC GTGCAGATATTATCTGTCTTCAGGAGGTTCAAAGCGACCATTATGATGAGTATTTTGCTCCTGAACTGGACAAACATGGC TACAATGGTCTTTTCAAGAGAAAAACAACTGAGGTATCTAATGGAAACACCAACACAATTGATGGTTGTGCGACATTTTT CCGTAGAGACAGATTCTCACATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCTCAGTCTTTAACAGATGCTATGG TTCCAACTGCTCAGAAGAAAATTGCCTTGAGTCGGCTGGTTAAGGACAATGTTGCACTAATAGTGGTTCTAGAAGCAAAA GCTAACAATCAGGGAGTTGATAATCCTGGGAAAAAACAGCTTTTTTGTGTGGCAAATACACATGTAAACGTACAACACGA TTTAAAAGATGTCAAACTCTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATAGCTGCAAGCGCAGATATCCCCA TGTTGGTTTGTGGAGATTTTAATTCAGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCGTCA CATCCTGATTTAGCAGTTGACCCACTTAATATTTTACACCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGC ATACTCATCTTTTGCAAGAACGGTTGGCCATGGATTTGAGCAGCATAAAAGGAGACTGGATGGTGGAACAAATGAACCTT TATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCA TTGTTAGAGTTATTGGATGAGGAGAGTTTGAGGAAGGACACTGCACTTCCCTCACCCGAATGGCCCTCAGATCATATAGC TCTTTTAGCTGAGTTTCGCTGCACTAGGAATAAATCTAGACGTTGA
Protein sequence (LotjaGi5g1v0115900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTVLRVHLPSDIPIVGCELTPYVLIRRPDTNINNDDVPETAPVGGHFLRYKWYRVHSDKKVAVCSIHPSEQATLQCLAC TKANIPVSKSYHCTTKCFSNAWQHHRVLHERAANAANENGNEEEEVFGRFNSSGSGVINSNLSASALSASLTNGFAAPLY PAAVPKRLGGESWHEVGRSKTYIPTADDIGHVLKFECAVVDAETKLPVGHVNTILTSHVIHAPSPIPRRMIRVDGTGHLD ANGRQSSSGTFTILSYNILSEACASNALYNYCPPWALSWPYRRQSLLREIVGYRADIICLQEVQSDHYDEYFAPELDKHG YNGLFKRKTTEVSNGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMVPTAQKKIALSRLVKDNVALIVVLEAK ANNQGVDNPGKKQLFCVANTHVNVQHDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPS HPDLAVDPLNILHPHSKLVHQLPLVSAYSSFARTVGHGFEQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVES LLELLDEESLRKDTALPSPEWPSDHIALLAEFRCTRNKSRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 596 | 562 | 0.0 | – | |
| PANTHER | 35 | 596 | 562 | 0.0 | – | |
| Pfam | 71 | 110 | 40 | 7.4E-8 | ||
| Gene3D | 216 | 601 | 386 | 9.1E-115 | ||
| SUPERFAMILY | 246 | 595 | 350 | 4.84E-39 | ||
| CDD | 253 | 594 | 342 | 1.6991E-153 | – | |
| Pfam | 254 | 585 | 332 | 7.5E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0115900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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