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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
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We have found 323 results. Now displaying 7 of 7 with 50 rows per page. This search has taken 6.008s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0129400.3
n.a. Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P84227|H32_BOVIN Histone H3.2; TrEMBL-Plants: tr|M7ZPB4|M7ZPB4_TRIUA Histone H3; Found in the gene: LotjaGi6g1v0129400 LjG1.1_chr6 34036027 34043369 +
3 domain predictions
1 GO term
LotjaGi6g1v0129500.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129500 LjG1.1_chr6 34035458 34035769 -
3 domain predictions
1 GO term
LotjaGi6g1v0129500.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129500 LjG1.1_chr6 34035458 34035769 -
3 domain predictions
1 GO term
LotjaGi6g1v0129600.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129600 LjG1.1_chr6 34042389 34042700 -
3 domain predictions
1 GO term
LotjaGi6g1v0129600.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P84048|H4_ACRAS Histone H4; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0129600 LjG1.1_chr6 34042389 34042700 -
3 domain predictions
1 GO term
LotjaGi6g1v0133900.1
n.a. Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0133900 LjG1.1_chr6 38674593 38675018 +
3 domain predictions
1 GO term
LotjaGi6g1v0133900.2
n.a. Histone H4; TAIR: AT1G07660.2 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7V4E0|K7V4E0_MAIZE Histone H4; Found in the gene: LotjaGi6g1v0133900 LjG1.1_chr6 38674707 38675018 +
3 domain predictions
1 GO term
LotjaGi6g1v0140100.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0140100 LjG1.1_chr6 40727727 40730006 -
3 domain predictions
1 GO term
LotjaGi6g1v0140100.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0140100 LjG1.1_chr6 40728228 40729016 -
3 domain predictions
1 GO term
LotjaGi6g1v0140100.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0140100 LjG1.1_chr6 40728228 40729031 -
3 domain predictions
1 GO term
LotjaGi6g1v0143300.1
n.a. Nuclear transcription factor Y protein; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3; TrEMBL-Plants: tr|A0A0L9VBC0|A0A0L9VBC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0143300 LjG1.1_chr6 41322248 41324151 -
3 domain predictions
1 GO term
LotjaGi6g1v0153200.1
n.a. Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 LjG1.1_chr6 43123825 43130381 -
3 domain predictions
1 GO term
LotjaGi6g1v0153200.2
n.a. Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 LjG1.1_chr6 43124138 43130267 -
2 domain predictions
1 GO term
LotjaGi6g1v0153200.3
n.a. Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 LjG1.1_chr6 43124138 43130267 -
3 domain predictions
1 GO term
LotjaGi6g1v0153200.4
n.a. Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200 LjG1.1_chr6 43124138 43130267 -
3 domain predictions
1 GO term
LotjaGi6g1v0198700.1
n.a. Histone H3 like protein; TAIR: AT1G01370.1 Histone superfamily protein; Swiss-Prot: sp|Q8RVQ9|HTR12_ARATH Histone H3-like centromeric protein HTR12; TrEMBL-Plants: tr|W5S5L3|W5S5L3_LOTJA Centromere-specific histone H3 variant; Found in the gene: LotjaGi6g1v0198700 LjG1.1_chr6 49553373 49557992 +
3 domain predictions
1 GO term
LotjaGi6g1v0217300.1
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 LjG1.1_chr6 51915885 51917724 +
3 domain predictions
1 GO term
LotjaGi6g1v0217300.2
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 LjG1.1_chr6 51916487 51917326 +
3 domain predictions
1 GO term
LotjaGi6g1v0217300.3
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 LjG1.1_chr6 51916535 51917326 +
3 domain predictions
1 GO term
LotjaGi6g1v0217300.4
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|A0A0B2S5G5|A0A0B2S5G5_GLYSO 3-isopropylmalate dehydratase; Found in the gene: LotjaGi6g1v0217300 LjG1.1_chr6 51916614 51917326 +
3 domain predictions
1 GO term
LotjaGi6g1v0217300.5
n.a. Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300 LjG1.1_chr6 51916614 51917354 +
3 domain predictions
1 GO term
LotjaGi6g1v0248200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G47810.1 nuclear factor Y, subunit B5; Swiss-Prot: sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5; TrEMBL-Plants: tr|I3TAX6|I3TAX6_MEDTR Nuclear transcription factor Y subunit B18; Found in the gene: LotjaGi6g1v0248200 LjG1.1_chr6 56031243 56032005 -
3 domain predictions
1 GO term
LotjaGi6g1v0297200_LC.1
n.a. Nuclear factor Y subunit C; TAIR: AT3G48590.1 nuclear factor Y, subunit C1; Swiss-Prot: sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1; TrEMBL-Plants: tr|A0A1D1YAW6|A0A1D1YAW6_9ARAE Nuclear transcription factor Y subunit C-3; Found in the gene: LotjaGi6g1v0297200_LC LjG1.1_chr6 61474833 61476756 -
3 domain predictions
1 GO term