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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0198700 |
| Transcript ID | LotjaGi6g1v0198700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H3 like protein; TAIR: AT1G01370.1 Histone superfamily protein; Swiss-Prot: sp|Q8RVQ9|HTR12_ARATH Histone H3-like centromeric protein HTR12; TrEMBL-Plants: tr|W5S5L3|W5S5L3_LOTJA Centromere-specific histone H3 variant; Found in the gene: LotjaGi6g1v0198700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49553373..49557992) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAAGGAGGCAAATTGGAAAATCAAAATTCGAAGCCGTTTCTTCTCTGCAAGCGTTTCCATGGCGAGAATCAAGCACG TTCCTGCTGCTCGTAGAACCGGTAACTTCCACTCTCACCCCTTCTTTCTCTTCAATTCTTCTTCGTTTTCGCAAAACCCT CACTTCTTCCCTTTCACAGCTCGAAAGAAAGCACCAACCGCAGCAGCACCATCCACATCTGCAACACCACAACAAACCCA ATCAGTAACACATTCTCTCTTCTCTCTTTGGAAGAGTTTCATAATCATCGATTTAGTTTGTTTTTTCATGAATTAATTTG TTTAAATCACTGCAATGAGGGTTCAATTAACCGTTTTCATCAGCATTTATTTCCAAAGTTTTTATCTTTAAGAGATTTTA ATGATGGGTTTTCAATTTTGTGAAGCCTGGTCGTCGAGAGAGGAGTAGAGAACAACAACGGGAACCGCAGTGTGAGTGTT CAAGTTGTTTCGTGGAATTAGGGTGATTTGTGGTGTTGAGTTGATTTTTTTTTATCATTTGTTGATTTTGGAAAAATGGA ATGGAAATTGCAGCACCTGGGACTCAGGGGAAGAAGAAGAGGCGCAATAGGCCGGGAACGGTGGCGCTTCGTGAGATCAG GCGTTATCAGAAGAGTGTAGACTTGCTTATCCCTGCTGCCCCCTTTCTGAGATTGGTAAGTTGTTTACTTCTATAGTGGC GTCGGCGACAACTTTTTAATGATCATCAATATCACATACCCTTTGTTAGTTTTTAAGATCATGCTCTTTGTGGAATTGTG GTTTTTTTTTGTATTAACCAAGATTTGACTGAATTAGATCTCGTGGGAAGTTTGTTCTTACTGCTGTTGTGTTGTGTTGT GCATTTTTTTTCTTTTTAAATTTTGTCTGCAGGTTAGAGAGACTACACGTCAGTTATCTTTTGAGGTTTCTCGCTGGACA GCTGAAGCTGTGGTGGCTCTGCAGGAGGTATATGAACTTTTTTCCATGTTCATTTTAGTAATCACTTGTGTGCTTGCAAC TTGCAAATGGCCATAGTCTTGGTTATCATGCAAATGCTTCTTCTTCTTCTTTTTTTGTTCAAAGGGAATTTGTATTGAAA AGTAAATTCATTTTAACCATTGTAGTCATAATCGCTATTACTATTGCTATTATGTTAGGTTATAAGGTCTTGAAATTATT TACGTATTGGCCAGAGTTGTTAATAGTGCACTATAGCGCCGTAGCGGCCTTTTTTTGCTCCTTGTTGGAGCGTAGCGGTG CAATTCAGAGTAGCGGCTGTTGCGGCCGCTATAGCAGAGCGCTATTTGGTGGAACTGATAAAATCCCCCAAAAAATGCCC TCTTAAAGTTAAAATAAGGCATTGTTGGGGGGGGGGGGGGGGTATTTTAGGGTCTTTGCTTCGGAAACATACTGAATTTG TACAGTTTGAGGAAGTCATCTAGAACTGTGATAGTAGTTGATAAAGAGGAAGAGTTGGATTCAGACGAGGATGATTGGTG GTTCTTGTTTAGGAAACTTTAATTTGAATTTTCATGTTCTCAGGCAGTTTAGTAAGCATTAGAGGCTTAAACTTCTGGGC TACATTGACTTCTCTTCCTGTATGTTTTGTTTAAGACACCTATTACTTTTTATTCTTAATAATGAGTACCATGAATTTTG AGTAGTTTGTATCAGTTTTGAGCATTTATATATCTGTATAGTCAAATTATGTACTCTGTATAAAATACTCAGAATAGTGG ACACTATACCACTATAGCATTTTTTGGGGTCAGCTGCTATCCAAGATGGACTACTATGGTATTGGCTTTTTAAAAATTTT AAGCGTGTTGACCTACAAAAAGATTTGAGCCTATAAGCTTGTGATGTACTTATGATCTTTTTAATTTTTTTTATAAAATA GGCTTTTTGGACAGACTTTTCAAAAGGTCAGGTTAGGCATTAAAAAATGTCTCTAGGTAAACATGATACACTCAAGCCTT AGAAAGCTTGAGACCTAATTTATATCCACCCTTAAATAAGCATACTCATCAGTACTTTTTTTGGGCTAAGGGGGAATCCC ACAGGAAGGGAGAGTGGGAATGAGGACCGGAGTGCATTCTAGGCTGAAACTGTGCACTTTCCATGCATGTCCCTGAACCC TAACGGGAACTTAAATTACGTCAGATCAAAAACTGAATTCAGAATGTTTATATTTGTTTAACCATAATAAAGATAGTGAA CTTTATTATTGCTACCTATTGGGTTGAGCAGTACATTTATGTGTGCTTCTTTACATAGCAGCTAAGGCTTCTGTTCTCCT ATCATTCCACTCACATAATCTATTTGAGAATCTGTTTCTACAACTTTGGCCATGTTTTGAATGGAAATGGAATAAAATCA AAATGGAAAGGATGGAATGAAAAAGAGCTGTTATCCCTGTGTTTGGAATATTATTGAGGGAGGAAAGGAGGGGTATAACT TTGAATTCTCAATCTAACCCTCATAACATTTTAAAGCAAACAAGTATATGAGGTAAAATAGCAAATGGCAATTTTTAAAT AAAATCTATTTCCCTTAACTAACTCCCACGTTGGAGGGGGACAAAGTGAGTTCATGGAGAAATGGTTCCCCTCACATGAC CTTCCCTTCCACAATATAAGTTTTGAACTCCGAGCTGGGGAAGTTACTCTCGTCCCATACTTCACTGCCGTTCCTCCTCC TCCCAAAGTTAGCTCTCATCCAAAAGACCACCATCTATATCTACTTCTCTGCTGGTTATTCCGGATGTCGTGTAGACTCC TTGTCAGCAGTGTTGCTGATTTTCTTATTATTTTAATATGATTGTAGCTGCTTTAAGAGTTATGATTCATAACATATTTC GCATATGACATGATGTTTTATTTTACAATCCTGCAGGCAGCGGAGGACTATCTTGTTACTATGTTTGAAGATGGAATGCT CTGCGCAATTCATGCAAAGCGCGTTACCCTTAGTAAGTTGATATGATTTTTAAGTTCTGTTCTCTGACTTTCCTTTCATT GATCATTACATCATTTACAAATTTATTTCTTATAAAATTAATGCTGCTTTTATTGGTGATGAATGAGTCTTTTTCTTGGT TACAAATGGATGAATTCTTTCCTTACTATATTAGTCATGTTTAAAGCAAATATTCTAGAGTTTGTAATCTGTGTGATGAA GTTTGCTTTCTGGACACAGTAAATGCTAGATAAAACGAATTGTTGTAGTGTAGTGGCTGGGAACGTTTGTCTATTTTTAT AAAGCATCATGAATTGTTTCTATTGAGCAGAGCACTTGGAGTTCTTACTCACCATGTCCATTCACTCCCATCCTTTTGTT TCAGTATGTCCATGTGTAAGAAATGCTACTATTGGCTCTACCATGTAACTGGCGTCTGGCACATATTACATCTACTAAAT AAATAATGAAAATGATAAATGTCAACTACTGCAAGGGTTGCAGATTGCATGGTTGATTATGATCAACAAATTTCAGTAAT AGGAAATGTCATTCTTAAGCAGAGGTATTCTTGTGTTGCCTCCAGGCGGAGAGCTTGTTTCATACTGTCATCAATGTACT TAATTTGCCAATATTTAAATCAGTGTTGTCAAATATCTTCCATGGCGGCACCATTGCAGAATCTCATGGCGGGTTTTTGG CTCTCCGCCATGGCCGATATTCTGCCATACTCCACCATCATTATCATTATTTGTCAAATATGGCGGTTCTTGGCTCTTTG CCATAGTCCGTCATGCGCCATTAACAACACTGATTTAAATTAACAGAATACTTAGCAGTTCTGGAGGAAAATACTGAACA GAATCCTCAAATAGAACTTTGGTTAGCTAGTATTTCCCTAAGATCATTTCATTACTGCTGTATATTAATTGATTTATGTT TTTCCCTTACGAATATTTATATTTTGTTTCCTTTTAGTAGCCTAATATTTATATTTATGTTGTATTTACTTTTGTTGCTG TCTCAGTGAAAAAGGATATTGAGTTGGCCCGTCGGCTTCGAGGAATAGGAAGGCCTTGGTGAGGACAAGATGCCAGTATT GAACGCCATTGCTGCTCTCGTGTTACGTAAAAACTTGACTCAGTACAGACTAGAGGGTTTCAAAGAAGCCATTGCTGCTT GTAAACCCAGAACTCGTATATTGCTGTGATTATTTAGTCATTTAAAGTAGGAACTAGGCTAACTCGTGTATTGCCAATGA CCAATTAATATCTTCATAGGTGATTTGTTGTAACCAATCATTGTTGAAAAGTTGTTTGCTACTGAGGCTGACTTCAAATT TGGCGAGCTATGTACTAGTTTACGGTTTACCATTATCTTAGTGAAATATTTCAAGATTATTGTCACTCATATTTACTTGC TATGGCAGATTGCTAGAAGGAACTCATGCCATTTTTTAGAATGATCATGAATCTACATGACCTATGTGGACATGACTATT ATAGAATGAGAGTACCTTTTATATAATTTACGGTCTCTTGATTACATTGGTGTTGTGGGAGGGAATCATGCGATCCCACA TATGATGTGTTATCTTGGCCATACAAGTCAGGTTTATTTTCCATACTCGGATGAACAAAT
CDS sequence (LotjaGi6g1v0198700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGAATCAAGCACGTTCCTGCTGCTCGTAGAACCGCTCGAAAGAAAGCACCAACCGCAGCAGCACCATCCACATC TGCAACACCACAACAAACCCAATCACCTGGTCGTCGAGAGAGGAGTAGAGAACAACAACGGGAACCGCAGTCACCTGGGA CTCAGGGGAAGAAGAAGAGGCGCAATAGGCCGGGAACGGTGGCGCTTCGTGAGATCAGGCGTTATCAGAAGAGTGTAGAC TTGCTTATCCCTGCTGCCCCCTTTCTGAGATTGGTTAGAGAGACTACACGTCAGTTATCTTTTGAGGTTTCTCGCTGGAC AGCTGAAGCTGTGGTGGCTCTGCAGGAGGCAGCGGAGGACTATCTTGTTACTATGTTTGAAGATGGAATGCTCTGCGCAA TTCATGCAAAGCGCGTTACCCTTATGAAAAAGGATATTGAGTTGGCCCGTCGGCTTCGAGGAATAGGAAGGCCTTGGTGA
Protein sequence (LotjaGi6g1v0198700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARIKHVPAARRTARKKAPTAAAPSTSATPQQTQSPGRRERSREQQREPQSPGTQGKKKRRNRPGTVALREIRRYQKSVD LLIPAAPFLRLVRETTRQLSFEVSRWTAEAVVALQEAAEDYLVTMFEDGMLCAIHAKRVTLMKKDIELARRLRGIGRPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 155 | 155 | 9.4E-63 | – | |
| MobiDBLite | 1 | 68 | 68 | - | – | |
| PANTHER | 1 | 155 | 155 | 9.4E-63 | ||
| Gene3D | 2 | 156 | 155 | 3.9E-46 | ||
| PRINTS | 9 | 23 | 15 | 9.3E-8 | ||
| MobiDBLite | 20 | 36 | 17 | - | – | |
| Pfam | 28 | 153 | 126 | 1.2E-38 | ||
| SUPERFAMILY | 30 | 155 | 126 | 8.22E-37 | ||
| SMART | 54 | 157 | 104 | 9.8E-48 | ||
| PRINTS | 135 | 156 | 22 | 9.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi6g1v0198700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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