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LotjaGi6g1v0217300.5

Overview

Field Value
Gene ID LotjaGi6g1v0217300
Transcript ID LotjaGi6g1v0217300.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SJQ5|B6SJQ5_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:51916614..51917354) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTCGTACCAAGCAAACTGCTCGTAAGTCATCCGGTGGAAAAGCTCCTAGGAAGCAGCTTGCAACCAAGGTTTGTTA TGGAATTATCACCTCAATCCTTATTCTCTTAATTTGAATTGGGTGCTTGAAATTTTGGCCAACGATTTCATGATTTTGTT TTTTCTACTTTAGGCTGCTCGTAAGTCTGCACCACCCACCGGTGGGATGAAGAAGCCGCATCGTTACCGTCCTGGAACTG TTGCTCTTCGGTTAGTGACCCTTTTCTGGAATCCTTTATATTTGATTGTTTTATTGGGGTTTCCATTTTCTTGTTTTGTT ATGTTTTCTAATAATTGAATTGTTGTTGATGGAACAGTGAGATTAGGAATCACCAGAAGAGTACTGATCTGCTGATCAGG AAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAAGTAATGTGTAATTACTGATGTGAGATTCAAGT CTTATGTGTATTTTTTCTTAATCATTGTGACTAAAGTTATGTATTTGTTCCTGTGGTTGCAGACTGACATGCGTTTCCAG ACTCATGCTGTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTTGTTGGACTCTTTGAGGACACCAACTTGTGCGCCAT CCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCCAGTTAGCAAGGAGGATTCGTGGTGAGCATATTTGATGTGGTA CGTTTGGTGCTGGTCATATGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0217300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCGTACCAAGCAAACTGCTCGTAAGTCATCCGGTGGAAAAGCTCCTAGGAAGCAGCTTGCAACCAAGGCTGCTCG TAAGTCTGCACCACCCACCGGTGGGATGAAGAAGCCGCATCGTTACCGTCCTGGAACTGTTGCTCTTCGTGAGATTAGGA ATCACCAGAAGAGTACTGATCTGCTGATCAGGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAA ACTGACATGCGTTTCCAGACTCATGCTGTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTTGTTGGACTCTTTGAGGA CACCAACTTGTGCGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCCAGTTAGCAAGGAGGATTCGTGGTG AGCATATTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0217300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARTKQTARKSSGGKAPRKQLATKAARKSAPPTGGMKKPHRYRPGTVALREIRNHQKSTDLLIRKLPFQRLVREIAQDFK TDMRFQTHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGEHI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11426:SF224
1 135 135 5.1E-98 –
MobiDBLite
mobidb-lite
1 42 42 - –
PANTHER
PTHR11426
1 135 135 5.1E-98
IPR000164
Pfam
PF00125
1 132 132 7.2E-52
IPR007125
SUPERFAMILY
SSF47113
2 134 133 2.9E-55
IPR009072
Gene3D
G3DSA:1.10.20.10
2 136 135 6.7E-76
IPR009072
PRINTS
PR00622
3 17 15 6.7E-82
IPR000164
ProSitePatterns
PS00322
15 21 7 -
IPR000164
PRINTS
PR00622
17 31 15 6.7E-82
IPR000164
PRINTS
PR00622
34 55 22 6.7E-82
IPR000164
SMART
SM00428
34 136 103 4.7E-71
IPR000164
PRINTS
PR00622
58 75 18 6.7E-82
IPR000164
ProSitePatterns
PS00959
67 75 9 -
IPR000164
PRINTS
PR00622
80 98 19 6.7E-82
IPR000164
PRINTS
PR00622
98 114 17 6.7E-82
IPR000164
PRINTS
PR00622
114 135 22 6.7E-82
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0217300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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