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LotjaGi6g1v0217300.2

Overview

Field Value
Gene ID LotjaGi6g1v0217300
Transcript ID LotjaGi6g1v0217300.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|B6SRG7|B6SRG7_MAIZE Histone H3; Found in the gene: LotjaGi6g1v0217300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:51916487..51917326) extracted from Lotus japonicus Gifu genome v1.2.

AGTCATGATTGTTTTGATTGAGGGGACGAGAATGTCCATGATCTTTAAATGTTGTTTATCTGGTTGTGTTTGTTGTTTTA CTTTCTTGTGTTTTTCTGAATTTTTTTTCGGCCGTTGACATATACAGATGGCTCGTACCAAGCAAACTGCTCGTAAGTCA TCCGGTGGAAAAGCTCCTAGGAAGCAGCTTGCAACCAAGGTTTGTTATGGAATTATCACCTCAATCCTTATTCTCTTAAT TTGAATTGGGTGCTTGAAATTTTGGCCAACGATTTCATGATTTTGTTTTTTCTACTTTAGGCTGCTCGTAAGTCTGCACC ACCCACCGGTGGGATGAAGAAGCCGCATCGTTACCGTCCTGGAACTGTTGCTCTTCGGTTAGTGACCCTTTTCTGGAATC CTTTATATTTGATTGTTTTATTGGGGTTTCCATTTTCTTGTTTTGTTATGTTTTCTAATAATTGAATTGTTGTTGATGGA ACAGTGAGATTAGGAATCACCAGAAGAGTACTGATCTGCTGATCAGGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATT GCTCAGGACTTCAAAGTAATGTGTAATTACTGATGTGAGATTCAAGTCTTATGTGTATTTTTTCTTAATCATTGTGACTA AAGTTATGTATTTGTTCCTGTGGTTGCAGACTGACATGCGTTTCCAGACTCATGCTGTCCTTGCATTGCAAGAAGCTGCT GAGGCATACCTTGTTGGACTCTTTGAGGACACCAACTTGTGCGCCATCCATGCTAAGCGTGTCACTATCATGCCTAAGGA TATCCAGTTAGCAAGGAGGATTCGTGGTGAGCATATTTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0217300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGTTTTGATTGAGGGGACGAGAATGTCCATGATCTTTAAATGTTGTTTATCTGGTTGTATGGCTCGTACCAAGCA AACTGCTCGTAAGTCATCCGGTGGAAAAGCTCCTAGGAAGCAGCTTGCAACCAAGGCTGCTCGTAAGTCTGCACCACCCA CCGGTGGGATGAAGAAGCCGCATCGTTACCGTCCTGGAACTGTTGCTCTTCGTGAGATTAGGAATCACCAGAAGAGTACT GATCTGCTGATCAGGAAACTCCCTTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAAACTGACATGCGTTTCCA GACTCATGCTGTCCTTGCATTGCAAGAAGCTGCTGAGGCATACCTTGTTGGACTCTTTGAGGACACCAACTTGTGCGCCA TCCATGCTAAGCGTGTCACTATCATGCCTAAGGATATCCAGTTAGCAAGGAGGATTCGTGGTGAGCATATTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0217300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIVLIEGTRMSMIFKCCLSGCMARTKQTARKSSGGKAPRKQLATKAARKSAPPTGGMKKPHRYRPGTVALREIRNHQKST DLLIRKLPFQRLVREIAQDFKTDMRFQTHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGEHI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11426:SF224
13 156 144 7.1E-100 –
PANTHER
PTHR11426
13 156 144 7.1E-100
IPR000164
Pfam
PF00125
22 153 132 1.2E-51
IPR007125
SUPERFAMILY
SSF47113
23 155 133 5.0E-55
IPR009072
Gene3D
G3DSA:1.10.20.10
23 157 135 1.2E-75
IPR009072
PRINTS
PR00622
24 38 15 1.1E-81
IPR000164
MobiDBLite
mobidb-lite
28 63 36 - –
ProSitePatterns
PS00322
36 42 7 -
IPR000164
PRINTS
PR00622
38 52 15 1.1E-81
IPR000164
PRINTS
PR00622
55 76 22 1.1E-81
IPR000164
SMART
SM00428
55 157 103 4.7E-71
IPR000164
PRINTS
PR00622
79 96 18 1.1E-81
IPR000164
ProSitePatterns
PS00959
88 96 9 -
IPR000164
PRINTS
PR00622
101 119 19 1.1E-81
IPR000164
PRINTS
PR00622
119 135 17 1.1E-81
IPR000164
PRINTS
PR00622
135 156 22 1.1E-81
IPR000164

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0217300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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