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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011545
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We have found 320 results. Now displaying 7 of 7 with 50 rows per page. This search has taken 5.420s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi6g1v0223800_LC.2
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT4G35740.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr|A0A072V697|A0A072V697_MEDTR RecQ family ATP-dependent DNA helicase; Found in the gene: LotjaGi6g1v0223800_LC LjG1.1_chr6 52878390 52888125 +
2 domain predictions
2 GO terms
LotjaGi6g1v0223800_LC.4
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT4G35740.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr|A0A072V697|A0A072V697_MEDTR RecQ family ATP-dependent DNA helicase; Found in the gene: LotjaGi6g1v0223800_LC LjG1.1_chr6 52878492 52886829 +
2 domain predictions
2 GO terms
LotjaGi6g1v0223800_LC.7
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT4G35740.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3; TrEMBL-Plants: tr|A0A151RMA8|A0A151RMA8_CAJCA ATP-dependent DNA helicase Q5; Found in the gene: LotjaGi6g1v0223800_LC LjG1.1_chr6 52878541 52882513 +
2 domain predictions
2 GO terms
LotjaGi6g1v0229800.1
n.a. ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr|I1L1K7|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 LjG1.1_chr6 53865940 53868286 +
2 domain predictions
2 GO terms
LotjaGi6g1v0229800.2
n.a. ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr|I1L1K7|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 LjG1.1_chr6 53865942 53868114 +
2 domain predictions
2 GO terms
LotjaGi6g1v0229800.3
n.a. ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1; TrEMBL-Plants: tr|V7CCL1|V7CCL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 LjG1.1_chr6 53865954 53868114 +
2 domain predictions
2 GO terms
LotjaGi6g1v0229800.4
n.a. ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr|I1L1K7|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 LjG1.1_chr6 53865974 53868122 +
2 domain predictions
2 GO terms
LotjaGi6g1v0229800.5
n.a. ATP-dependent RNA helicase; TAIR: AT3G13920.4 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr|I1L1K7|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 LjG1.1_chr6 53865986 53868114 +
2 domain predictions
2 GO terms
LotjaGi6g1v0242500.1
n.a. ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 LjG1.1_chr6 55470266 55474808 +
2 domain predictions
2 GO terms
LotjaGi6g1v0242500.2
n.a. ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 LjG1.1_chr6 55470273 55474820 +
2 domain predictions
2 GO terms
LotjaGi6g1v0242500.3
n.a. ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 LjG1.1_chr6 55470275 55474827 +
2 domain predictions
2 GO terms
LotjaGi6g1v0242500.4
n.a. ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 LjG1.1_chr6 55470375 55473833 +
2 domain predictions
2 GO terms
LotjaGi6g1v0242500.5
n.a. ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 LjG1.1_chr6 55470393 55473833 +
2 domain predictions
2 GO terms
LotjaGi6g1v0242500.7
n.a. ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 LjG1.1_chr6 55470393 55473833 +
2 domain predictions
2 GO terms
LotjaGi6g1v0263600.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT3G06480.1 DEAD box RNA helicase family protein; Swiss-Prot: sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40; TrEMBL-Plants: tr|A0A151T665|A0A151T665_CAJCA DEAD-box ATP-dependent RNA helicase 40; Found in the gene: LotjaGi6g1v0263600 LjG1.1_chr6 57733441 57742376 -
2 domain predictions
2 GO terms
LotjaGi6g1v0267500.1
n.a. ATP-dependent RNA helicase DRS1; TAIR: AT4G16630.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28; TrEMBL-Plants: tr|A0A151T1D8|A0A151T1D8_CAJCA DEAD-box ATP-dependent RNA helicase 28; Found in the gene: LotjaGi6g1v0267500 LjG1.1_chr6 58206372 58206785 -
2 domain predictions
2 GO terms
LotjaGi6g1v0269600.1
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 LjG1.1_chr6 58406349 58420346 +
2 domain predictions
2 GO terms
LotjaGi6g1v0269600.2
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr|I1L0G0|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600 LjG1.1_chr6 58406481 58420451 +
2 domain predictions
2 GO terms
LotjaGi6g1v0361700.1
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700 LjG1.1_chr6 67368666 67383013 -
2 domain predictions
2 GO terms
LotjaGi6g1v0361700.2
n.a. ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700 LjG1.1_chr6 67375232 67383008 -
2 domain predictions
2 GO terms