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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0242500 |
Transcript ID | LotjaGi6g1v0242500.2 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55470273..55474820) extracted from Lotus japonicus Gifu genome v1.2.
ACAGAAATAGTGAACTCTTTTTCTAGGGCACAGAAACGCGAAAACCTCTCACAGATTGAAACTCAGGCTATCTCTCTCTC TCTCTCTGTAGCAACTCAACTCGTCGGCGTTTCGGCTACGATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAG GTCCCACCGTCACGGATGACATGGACTTCGAGACCACGGAGGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATT AAGGACGACCTGCTCCGCGGAATCTACCAGTACGGTTTCGAGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCAT CATCCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGCACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAG TTGTTGATACCTCCGTCAGAGAGTGAGTATACCCGTTCTGCTTTCTCAAATTTCTCTGTATCTGTGTTTTTACTTCGTTT GCCTAAGCATTCCCTGAGAAAACAAAGTAATTTGCGGTTGAATTTCTCAATTAGGGTTTTTGGGTAAGACTCAATTTTAG GGGTTTTGATTGGTGTTTGTGTTTGGATGGATAATGTTGATTTCAGAAATTTATGACTAGCAAGAAATTTTCACATGGGG TAGCTGATTTTCAGATGGAGGGTTTTTGGAGGGTGATTTTTTGTTTTCAATTTGTATAAATTATAGGAAATTTTTAAAGA ATGATAGACACTTAGTCACCTAAATGGCTCTGTTGAGCATAATATTGGAGATGTGTGATTTGCTTTGAACTGAGGATATT GTTTTCTTTTCGGTATGTGTTATTGTCAAGATATATGGTATAATGATTTTCTGAACAGGGTGCAGGTGTTAATCTTGTCG CCTACGAGGGAACTGGCGTCACAGACTGAGAAGGTTATATTGGCTGTTGGGGATTTTATTAACATACAAGCGCATGCTTG CGTTGGAGGTAAAAGTGTTGGGGAAGATATAAGGAAACTTGAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGCAGAG TTTGTGACATGATCAAGAGGAGAACCTTGCGCACAAGGACTATCAAGATGCTAGTTCTTGTGAGTTCATGGCTACTATAA TTGTCAATTCTTCATTGCATTTATTATTTGTTTTGTTGTCACCATATGTCAATGAGTATCTTATATGTATTTTTTCTTTC TATTAACAGGATGAATCTGATGAGATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCC TGACCTTCAGGTGGGTTCTCTTTCTCTGAATGTCCTTATTGTTGTTATTGTATTCTGAATGAATTTTCTCCTATTTGAAA TCTTATTATATTTTAACATAAACTAAGGTGCATATTGGTAGTATATTTTCTTTTGGCAATACTTAGGTGGGGCAAGGACA TGAAATAAAAATGATCTTGAATTTGAAATATACCGGAACTCCAATTCAGAAGAATTTCACTAATAAATTAGTATTGGGGG GGGAGTCTCTTAGGAGGGTGTTTGAAAATTGGATTTAGTGGCTTGGCATGACTTGAAGGTTTGACAATATGGGGAAAGAA ACTGTAGCAATGAATCAAGCCATATATTGAAGGAAGGATGGGGGAGGATGAGAAGTTTGATTCGTGAACTATTTTCCTGC ATATGACTATTTTTAGTAGTTTAATTTTTGAATTCATTGAAAACTAAGCATCTAAAATCAGCGACATTAAGAGCTGCTGA TTTTCTCCATAATAAGCAGCTTGCACTATCATTTGACTGTTGTCCTGTTCTCAAATGAAGTGGCTAGGCGAGGATGTTCT TTTACGGATTTTTTGTAGGTCCTGATATCTTTAATTGGATTTGTATTTTGATTTAAACTTATGCTGGTCCAATAACTCAC TTTTGCTTTATAACTTAACTGATTACGACTTCAAGATCCTTAGACCTTATTACTGATGTAGTATCAAGTATGTCGTGTTC TCTGAACTGTTGGGTTTTTACTATGTAGGTTTGCTTGATTTCTGCTACACTTCCCCATGAAATATTGGAGATAACAAATA AGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGTAAGCAGTTGCTTTCATTCTCTT AGTGCCTTTTGATTTTTAACTGGATATTGATGCAATTGCCTCCTCCCCCTCCCAATGACAGGGAATCAAGCAATTTTTCG TTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTTTATGATACTCTCACTATCACCCAAGCTGTCATA TTCTGCAACACTAAGAGAAAGGTAAATGAAAATTATCATCATTTCATTTGATTGGCTGGCTGTTCATTTCATCTCACTTT TAACAGACTAACAGAGTAGATTATTAGATTTTGCACTATCTTTCTATTCTTGCTCATTGTGATTTGTTTATCATTTCTGT GGTATTAATATATCCACTTTGAATAGGTGGACTGGTTAACTGAAAAGATGCGTAATAATAATTTCACTGTCTCATCAATG CACGGCGACATGCCTCAGAGAGAAAGAGATGCAATTATGGCAGAATTTCGTGCTGGATCAACCCGTGTACTAATTACAAC AGATGTTTGGGCTCGTGGTCTTGATGTGCAGCAGGCAAGATATTACACCATTCTGTGTGTTTTTATTTTTCCTGTGATGA GATATCATGAGTTCACCTTGGAAATATCCTGCTTAATGTGTGATACAGATGCTGCATAATTATGAGAGGCCTCCCTAAGA ATTGTTTCTGCTGCTTGTTGGAAACATAGATAATAATTGCTAACTTGAAGAGAACCTAAAGAATATTATTGTTGCAGACT TACAGCAAAAAAAATCATGACTGTTTGGACTAATAACTAATTTAGGTTATCAAGGGGCCTGGTATTCCAAATTTCAGGGA TTTAACAAAATTCTCTGGTTCTTCCTTTGCTGGTTGTATTTTTTGTTTTGGGTACAATGAAGGATGGGCTAATATAATAG CAATTTATGTTTCGCTCTGCATAAATACAAACCGATGGAATTATTTGACTGTCAATTAATTTATTGAGAAATTCTTCCCC TGATTTCTTTTGAATTGTACATGGAGGAATCAATCTCCTTTTTCACTGATCATGTATTTGCTTCTGTTATCAGGTTTCTT TAGTTATTAATTATGACCTTCCCAATAACCGTGAGCTGTACATTCATCGGATTGGTCGCTCTGGACGTTTTGGACGAAAG GTATTGGAAATGTTAAAATTAGTTGTATTTCTATTATTTACTGTCCTGAGTAGTTACCTAGTCTTATTTTCATATCAGAA ATTGTTCTGCACTATAGGAGGATTTTGAGAGGTTATCCGTTGATTCCTTATCTTCCACTCTTCCCATGTTCTCAAATTGT TTTGCAGGGTGTTGCAATAAATTTTGTCAAGAGCGATGATATCAAGATCTTGAGAGATATTGAACAATATTACAGTACTC AGATTGATGAAATGCCCATGAATGTTGCTGATCTTATATAGAATCCATTTCATATGCTGGGTGGAGTGAATTTGTCATAA CTTATGGGGATTTGTGCTTGGATGTGGTTTTTTCTCTGGTTTTCTTGTAACCTTGACATTTGGTTAATTAGAATTTTGAT TACAGTGCTCGACTGTACCAGAGGTGATGTGATGTCTTCCTTTGCTGATACGATTGAGATCAATGTGTAAATTGTGTTGA GTTTCTTCCTCTAATGTCTTACTTTTGTTGTTGAATCTGTAAAACTTAATGCTTCAAATGATATGTCATGTTTTAATGTT TGATGATATAGCTAATTTGTGGGCAGTTTTTTGTATTTATCTTATTCTATCTGGCAAGAGCTGGGATTTAAGAAAACCTT ACCCACAAGCTTGTATGCTTGGAAGGAAAAGCTGCGCCTTGGGATTTAATTCCAATGCCCCTGATTGCTGGATTTTCTTG TCGGATTCACTTGCATGGATACTGCAATGGAAAGTAATCATTGATGAGGCGAGAACGAATCAATATAGCTGTTGCGCTTT GTTGACTAAGCTATTTTAGAACTAGTCACGGGCTATTTTGGTGGTAGCAAATCTCACTTACAGTGGAGGGTGAGTCAGCA TCTCTAGTTTGCTGTTATTGGTTTTTCAAGTGTCAGGTTTTTGGCTGAATGCAGTGTGTCTTGTTTTTGTTCAAACCAGT ATTTTTGTCTGAGATGGAGGGAGCCTTGTGCAAGCTAGATTCCCAGGCCCCGTTTTTCATTTTTGGGCTAGCGACAAATC TCCCAGCTAACCTGATAATGTCTCCTCTGACTCTCAACACAGCACCTTGTTCGTTATTTAACAGTTGCAATAATGATTTG AGGGGTGGGGGACTGCATTGCATGAGTACACTAGTATTGCATGTGCAATAATGGTTCATTCACAGGCTACAAAACCTTAA GGATCTAACGTGTTTGTATCTTTAGTTCTATACTCAGCTCCAATACCTATACTTACAAAAATATTCGT
CDS sequence (LotjaGi6g1v0242500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAGGTCCCACCGTCACGGATGACATGGACTTCGAGACCACGGA GGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATTAAGGACGACCTGCTCCGCGGAATCTACCAGTACGGTTTCG AGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCATCATCCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGC ACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAGTTGTTGATACCTCCGTCAGAGAGGTGCAGGTGTTAATCTT GTCGCCTACGAGGGAACTGGCGTCACAGACTGAGAAGGTTATATTGGCTGTTGGGGATTTTATTAACATACAAGCGCATG CTTGCGTTGGAGGTAAAAGTGTTGGGGAAGATATAAGGAAACTTGAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGC AGAGTTTGTGACATGATCAAGAGGAGAACCTTGCGCACAAGGACTATCAAGATGCTAGTTCTTGATGAATCTGATGAGAT GTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCCTGACCTTCAGGTTTGCTTGATTTCTG CTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAA TTGACATTGGAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTTTA TGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACTAAGAGAAAGGTGGACTGGTTAACTGAAAAGATGCGTA ATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCAGAGAGAAAGAGATGCAATTATGGCAGAATTTCGTGCT GGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGTCTTGATGTGCAGCAGGTTTCTTTAGTTATTAATTA TGACCTTCCCAATAACCGTGAGCTGTACATTCATCGGATTGGTCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCAATAA ATTTTGTCAAGAGCGATGATATCAAGATCTTGAGAGATATTGAACAATATTACAGTACTCAGATTGATGAAATGCCCATG AATGTTGCTGATCTTATATAG
Protein sequence (LotjaGi6g1v0242500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATASVVPANRRRGPTVTDDMDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSG TGKTSMIALTVCQVVDTSVREVQVLILSPTRELASQTEKVILAVGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPG RVCDMIKRRTLRTRTIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKRDE LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMAEFRA GSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPM NVADLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 16 | 392 | 377 | 1.3E-178 | – | |
PANTHER | 16 | 392 | 377 | 1.3E-178 | – | |
Gene3D | 23 | 241 | 219 | 1.0E-65 | – | |
ProSiteProfiles | 33 | 61 | 29 | 10.889 | ||
CDD | 35 | 235 | 201 | 1.47688E-122 | – | |
SMART | 52 | 249 | 198 | 4.1E-53 | ||
Pfam | 58 | 220 | 163 | 6.5E-40 | ||
ProSiteProfiles | 64 | 234 | 171 | 24.995 | ||
SUPERFAMILY | 101 | 389 | 289 | 3.45E-72 | ||
Gene3D | 242 | 406 | 165 | 2.4E-61 | – | |
ProSiteProfiles | 245 | 406 | 162 | 26.991 | ||
CDD | 246 | 376 | 131 | 3.82036E-63 | – | |
Pfam | 259 | 367 | 109 | 1.4E-31 | ||
SMART | 286 | 367 | 82 | 7.9E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0242500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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