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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0229800 |
Transcript ID | LotjaGi6g1v0229800.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent RNA helicase; TAIR: AT3G13920.1 eukaryotic translation initiation factor 4A1; Swiss-Prot: sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11; TrEMBL-Plants: tr|I1L1K7|I1L1K7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0229800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53865942..53868114) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTATGAATGAGTTTTAATGCTATTTCGTTTTATCTTGCAGTATGGCTGGACTCGCACCGGAAGGCTCGCAGTTTGAT GCAAAGCATTATGATACCAAGATGAGTGAATTGTAAGAGCTTTTGATGTTTATCCTTTTTTCTTTCTTGTTCTCCACAAT GAAGTATGCAATTCTTGTTTGATTGGCATCCAGTTACAGTGGTTTTAAGCACGTTTTTGTCTAGTTCTGGAAACATGCTT ACAACGGGATTCTGATGTTATTTATTTGATTTTAATAACTGATGGGTGTGCTTTCAGGCTTACTACTGAAGGACAGGACT TCTTCACCTCCTATGATGAGGTTTATGAGAGTTTTGATGCTATGGGCCTTCAAGAGAACTTGCTGAGAGGCATTTATGCA TATGGTAGGTTTAACTTTATTTGTCGCCATCACTACTTTTCTTTCTTCAATTTTTAAACCCAAAGTTTTTTTCCATAATT TCATGTGATGGCAATTGAAAATTTATATTTCTGATTATTTGGGACACCTTGGAATTCTTCCTGGTTTATAGTTCAGTTAT AACGGCAGCATATCACTTTTATCATGCTGTCTGGCTCTATTCTGCTGTATTTTTGTGCAAATCATTGTGTTAATTGTCTT GCTTCTGTTATTGGATTTCATGGTCGAATGTTTAAACTTGTTTCTTATGTGTTTTAGGTTTTGAGAAGCCCTCAGCTATT CAGCAAAGAGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAAACAGCAAC TTTCTGTTCTGGGATTTTGCAGCAACTTGACTACAGTTTGACTGAATGCCAAGCCTTGGTTCTAGCACCAACTCGGGAGC TTGCTCAGCAGATTGAGAAAGTTATGCGAGCACTTGGAGACTATCTAGGTGTCAAGGTGCATGCTTGTGTTGGAGGTACC AGTGTTCGTGAAGACCAACGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCT TCGCAGGCAGTCACTTCGACCAGATAACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTTA AAGATCAGGTGCTTACTGTTTTTACTTTGTTAGTTCCAGTGTTTATTTCATGTGGCTGAAAATACTCACCATGCATACTG TTTATTTAACAATCATTTGTTTCAATTATTTAACTTTCGAAAATGATTCGTTGTGAGGAGTCAAGCCCAAATTGTTACTG TGTAGTTGGTTAACTCTCTTATCCACTGCAAGTTTCTTCCTTGATGAACTATTTTATTTCCATATATCTAGTTCTGACAG TTTAAACCTTTTAATGGATTCTATTTATTTGAAGTTTCTTTTACTATCATTACGTAAGCTATAAGTTTGTAATAAGTCTG TTTTGATTATCTAGGCGAGTCAACTTTTCTTGGCCTATTGATTTGATGTTCTAAATGAATTTGTGTACAAATTCTTTAAC CTTTATTTTATCATCAGATCTACGATATATTCCAACTGCTGCCATCCAAGATTCAAGTTGGAGTTTTCTCTGCTACAATG CCTCCTGAGGCTCTTGAAATCACCAGGAAGTTTATGAACAAACCTGTAAGGATCCTTGTGAAGCGTGATGAGCTCACCTT GGAGGGTATTAAGCAGTTTTACGTCAATGTTGAAAGAGAGGAATGGAAGCTCGATACACTCTGTGATCTTTATGAGACAT TGGCAATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTGACTGACAAGATGCGAAGCAGAGAC CACACAGTCTCGGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATTATGCGAGAATTCCGTTCTGGGTCTTC CCGTGTTTTAATCACTACTGATCTTTTGGCTCGTGGTATTGATGTGCAGCAAGTATCTTTGGTTATAAATTATGATCTCC CAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGGAGGAAAGGTGTTGCCATCAACTTTGTC ACAAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTCTACAATGTGGTAGTTGAGGAGCTGCCTTCAAATATTGC TGAACTACTTTGA
CDS sequence (LotjaGi6g1v0229800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGACTCGCACCGGAAGGCTCGCAGTTTGATGCAAAGCATTATGATACCAAGATGAGTGAATTGCTTACTACTGA AGGACAGGACTTCTTCACCTCCTATGATGAGGTTTATGAGAGTTTTGATGCTATGGGCCTTCAAGAGAACTTGCTGAGAG GCATTTATGCATATGGTTTTGAGAAGCCCTCAGCTATTCAGCAAAGAGGAATAGTTCCATTCTGCAAGGGACTTGATGTT ATACAACAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGTTCTGGGATTTTGCAGCAACTTGACTACAGTTTGAC TGAATGCCAAGCCTTGGTTCTAGCACCAACTCGGGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGAGCACTTGGAGACT ATCTAGGTGTCAAGGTGCATGCTTGTGTTGGAGGTACCAGTGTTCGTGAAGACCAACGCATTCTATCAAGCGGTGTTCAT GTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTTCGCAGGCAGTCACTTCGACCAGATAACATCAAGATGTTTGT ATTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTTAAAGATCAGATCTACGATATATTCCAACTGCTGCCATCCAAGA TTCAAGTTGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCTCTTGAAATCACCAGGAAGTTTATGAACAAACCTGTAAGG ATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAGTTTTACGTCAATGTTGAAAGAGAGGAATGGAAGCT CGATACACTCTGTGATCTTTATGAGACATTGGCAATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATT GGCTGACTGACAAGATGCGAAGCAGAGACCACACAGTCTCGGCAACCCATGGAGACATGGACCAGAATACCAGAGATATT ATTATGCGAGAATTCCGTTCTGGGTCTTCCCGTGTTTTAATCACTACTGATCTTTTGGCTCGTGGTATTGATGTGCAGCA AGTATCTTTGGTTATAAATTATGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTG GGAGGAAAGGTGTTGCCATCAACTTTGTCACAAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTCTACAATGTG GTAGTTGAGGAGCTGCCTTCAAATATTGCTGAACTACTTTGA
Protein sequence (LotjaGi6g1v0229800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLAPEGSQFDAKHYDTKMSELLTTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDV IQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH VVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVR ILVKRDELTLEGIKQFYVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNV VVEELPSNIAELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 20 | 406 | 387 | 2.6E-235 | – | |
PANTHER | 20 | 406 | 387 | 2.6E-235 | – | |
Gene3D | 30 | 248 | 219 | 9.8E-69 | – | |
ProSiteProfiles | 40 | 68 | 29 | 10.433 | ||
CDD | 44 | 242 | 199 | 4.5604E-137 | – | |
SMART | 59 | 256 | 198 | 7.7E-58 | ||
Pfam | 65 | 226 | 162 | 6.3E-41 | ||
ProSiteProfiles | 71 | 241 | 171 | 30.163 | ||
SUPERFAMILY | 109 | 394 | 286 | 2.47E-75 | ||
ProSitePatterns | 187 | 195 | 9 | - | ||
Gene3D | 249 | 413 | 165 | 6.0E-58 | – | |
ProSiteProfiles | 252 | 413 | 162 | 25.766 | ||
CDD | 253 | 383 | 131 | 6.66634E-61 | – | |
Pfam | 266 | 374 | 109 | 8.9E-29 | ||
SMART | 293 | 374 | 82 | 1.5E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0229800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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