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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0242500 |
| Transcript ID | LotjaGi6g1v0242500.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55470393..55473833) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAGGTCCCACCGTCACGGATGACATGGACTTCGAGACCACGGA GGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATTAAGGACGACCTGCTCCGCGGAATCTACCAGTACGGTTTCG AGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCATCATCCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGC ACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAGTTGTTGATACCTCCGTCAGAGAGTGAGTATACCCGTTCTG CTTTCTCAAATTTCTCTGTATCTGTGTTTTTACTTCGTTTGCCTAAGCATTCCCTGAGAAAACAAAGTAATTTGCGGTTG AATTTCTCAATTAGGGTTTTTGGGTAAGACTCAATTTTAGGGGTTTTGATTGGTGTTTGTGTTTGGATGGATAATGTTGA TTTCAGAAATTTATGACTAGCAAGAAATTTTCACATGGGGTAGCTGATTTTCAGATGGAGGGTTTTTGGAGGGTGATTTT TTGTTTTCAATTTGTATAAATTATAGGAAATTTTTAAAGAATGATAGACACTTAGTCACCTAAATGGCTCTGTTGAGCAT AATATTGGAGATGTGTGATTTGCTTTGAACTGAGGATATTGTTTTCTTTTCGGTATGTGTTATTGTCAAGATATATGGTA TAATGATTTTCTGAACAGGGTGCAGGTGTTAATCTTGTCGCCTACGAGGGAACTGGCGTCACAGACTGAGAAGGTTATAT TGGCTGTTGGGGATTTTATTAACATACAAGCGCATGCTTGCGTTGGAGGTAAAAGTGTTGGGGAAGATATAAGGAAACTT GAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGCAGAGTTTGTGACATGATCAAGAGGAGAACCTTGCGCACAAGGAC TATCAAGATGCTAGTTCTTGTGAGTTCATGGCTACTATAATTGTCAATTCTTCATTGCATTTATTATTTGTTTTGTTGTC ACCATATGTCAATGAGTATCTTATATGTATTTTTTCTTTCTATTAACAGGATGAATCTGATGAGATGTTGAGCAGAGGGT TTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCCTGACCTTCAGGTGGGTTCTCTTTCTCTGAATGTCCTTATT GTTGTTATTGTATTCTGAATGAATTTTCTCCTATTTGAAATCTTATTATATTTTAACATAAACTAAGGTGCATATTGGTA GTATATTTTCTTTTGGCAATACTTAGGTGGGGCAAGGACATGAAATAAAAATGATCTTGAATTTGAAATATACCGGAACT CCAATTCAGAAGAATTTCACTAATAAATTAGTATTGGGGGGGGAGTCTCTTAGGAGGGTGTTTGAAAATTGGATTTAGTG GCTTGGCATGACTTGAAGGTTTGACAATATGGGGAAAGAAACTGTAGCAATGAATCAAGCCATATATTGAAGGAAGGATG GGGGAGGATGAGAAGTTTGATTCGTGAACTATTTTCCTGCATATGACTATTTTTAGTAGTTTAATTTTTGAATTCATTGA AAACTAAGCATCTAAAATCAGCGACATTAAGAGCTGCTGATTTTCTCCATAATAAGCAGCTTGCACTATCATTTGACTGT TGTCCTGTTCTCAAATGAAGTGGCTAGGCGAGGATGTTCTTTTACGGATTTTTTGTAGGTCCTGATATCTTTAATTGGAT TTGTATTTTGATTTAAACTTATGCTGGTCCAATAACTCACTTTTGCTTTATAACTTAACTGATTACGACTTCAAGATCCT TAGACCTTATTACTGATGTAGTATCAAGTATGTCGTGTTCTCTGAACTGTTGGGTTTTTACTATGTAGGTTTGCTTGATT TCTGCTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGA TGAATTGACATTGGAGGTAAGCAGTTGCTTTCATTCTCTTAGTGCCTTTTGATTTTTAACTGGATATTGATGCAATTGCC TCCTCCCCCTCCCAATGACAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACTCTATG TGATCTTTATGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACTAAGAGAAAGGTAAATGAAAATTATCATC ATTTCATTTGATTGGCTGGCTGTTCATTTCATCTCACTTTTAACAGACTAACAGAGTAGATTATTAGATTTTGCACTATC TTTCTATTCTTGCTCATTGTGATTTGTTTATCATTTCTGTGGTATTAATATATCCACTTTGAATAGGTGGACTGGTTAAC TGAAAAGATGCGTAATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCAGAGAGAAAGAGATGCAATTATGG CAGAATTTCGTGCTGGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGTCTTGATGTGCAGCAGGCAAGA TATTACACCATTCTGTGTGTTTTTATTTTTCCTGTGATGAGATATCATGAGTTCACCTTGGAAATATCCTGCTTAATGTG TGATACAGATGCTGCATAATTATGAGAGGCCTCCCTAAGAATTGTTTCTGCTGCTTGTTGGAAACATAGATAATAATTGC TAACTTGAAGAGAACCTAAAGAATATTATTGTTGCAGACTTACAGCAAAAAAAATCATGACTGTTTGGACTAATAACTAA TTTAGGTTATCAAGGGGCCTGGTATTCCAAATTTCAGGGATTTAACAAAATTCTCTGGTTCTTCCTTTGCTGGTTGTATT TTTTGTTTTGGGTACAATGAAGGATGGGCTAATATAATAGCAATTTATGTTTCGCTCTGCATAAATACAAACCGATGGAA TTATTTGACTGTCAATTAATTTATTGAGAAATTCTTCCCCTGATTTCTTTTGAATTGTACATGGAGGAATCAATCTCCTT TTTCACTGATCATGTATTTGCTTCTGTTATCAGGTTTCTTTAGTTATTAATTATGACCTTCCCAATAACCGTGAGCTGTA CATTCATCGGATTGGTCGCTCTGGACGTTTTGGACGAAAGGTATTGGAAATGTTAAAATTAGTTGTATTTCTATTATTTA CTGTCCTGAGTAGTTACCTAGTCTTATTTTCATATCAGAAATTGTTCTGCACTATAGGAGGATTTTGAGAGGTTATCCGT TGATTCCTTATCTTCCACTCTTCCCATGTTCTCAAATTGTTTTGCAGGGTGTTGCAATAAATTTTGTCAAGAGCGATGAT ATCAAGATCTTGAGAGATATTGAACAATATTACAGTACTCAGATTGATGAAATGCCCATGAATGTTGCTGATCTTATATA G
CDS sequence (LotjaGi6g1v0242500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAGGTCCCACCGTCACGGATGACATGGACTTCGAGACCACGGA GGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATTAAGGACGACCTGCTCCGCGGAATCTACCAGTACGGTTTCG AGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCATCATCCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGC ACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAGTTGTTGATACCTCCGTCAGAGAGGTGCAGGTGTTAATCTT GTCGCCTACGAGGGAACTGGCGTCACAGACTGAGAAGGTTATATTGGCTGTTGGGGATTTTATTAACATACAAGCGCATG CTTGCGTTGGAGGTAAAAGTGTTGGGGAAGATATAAGGAAACTTGAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGC AGAGTTTGTGACATGATCAAGAGGAGAACCTTGCGCACAAGGACTATCAAGATGCTAGTTCTTGATGAATCTGATGAGAT GTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCCTGACCTTCAGGTTTGCTTGATTTCTG CTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAA TTGACATTGGAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTTTA TGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACTAAGAGAAAGGTGGACTGGTTAACTGAAAAGATGCGTA ATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCAGAGAGAAAGAGATGCAATTATGGCAGAATTTCGTGCT GGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGTCTTGATGTTTCTTTAGTTATTAATTATGACCTTCC CAATAACCGTGAGCTGTACATTCATCGGATTGGTCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCAATAAATTTTGTCA AGAGCGATGATATCAAGATCTTGAGAGATATTGAACAATATTACAGTACTCAGATTGATGAAATGCCCATGAATGTTGCT GATCTTATATAG
Protein sequence (LotjaGi6g1v0242500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATASVVPANRRRGPTVTDDMDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSG TGKTSMIALTVCQVVDTSVREVQVLILSPTRELASQTEKVILAVGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPG RVCDMIKRRTLRTRTIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKRDE LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMAEFRA GSTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVA DLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 16 | 389 | 374 | 1.3E-174 | – | |
| PANTHER | 16 | 389 | 374 | 1.3E-174 | – | |
| Gene3D | 23 | 241 | 219 | 9.9E-66 | – | |
| ProSiteProfiles | 33 | 61 | 29 | 10.889 | ||
| CDD | 35 | 235 | 201 | 6.90756E-123 | – | |
| SMART | 52 | 249 | 198 | 4.1E-53 | ||
| Pfam | 58 | 220 | 163 | 6.4E-40 | ||
| ProSiteProfiles | 64 | 234 | 171 | 24.995 | ||
| SUPERFAMILY | 101 | 386 | 286 | 2.93E-69 | ||
| Gene3D | 242 | 403 | 162 | 1.1E-57 | – | |
| ProSiteProfiles | 245 | 403 | 159 | 22.629 | ||
| CDD | 246 | 373 | 128 | 2.85979E-60 | – | |
| Pfam | 259 | 364 | 106 | 7.8E-28 | ||
| SMART | 286 | 364 | 79 | 1.2E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0242500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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