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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011991
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 324 results. Now displaying 2 of 7 with 50 rows per page. This search has taken 5.909s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0213609.1
n.a. PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 2 [Glycine max] gi|356517462|ref|XP_003527406.1| chr0 107871236 107872771 +
3 domain predictions
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Lj0g3v0213739.1
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468521|ref|XP_003604545.1| chr0 108005844 108010811 -
2 domain predictions
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Lj0g3v0214779.1
n.a. TIR-NBS-LRR type disease resistance protein [Medicago truncatula] gi|357452805|ref|XP_003596679.1| chr0 108871376 108877767 +
2 domain predictions
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Lj0g3v0215539.1
n.a. PREDICTED: isoliquiritigenin 2'-O-methyltransferase-like [Glycine max] gi|356532221|ref|XP_003534672.1| chr0 109223585 109225333 -
3 domain predictions
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Lj0g3v0217419.1
n.a. HMG-Y-related protein A [Medicago truncatula] gi|357460891|ref|XP_003600727.1| chr0 110690915 110692219 -
3 domain predictions
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Lj0g3v0221309.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356542397|ref|XP_003539653.1| chr0 113535537 113541310 -
2 domain predictions
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Lj0g3v0221339.1
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357469529|ref|XP_003605049.1| chr0 113547039 113556094 -
2 domain predictions
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Lj0g3v0221339.2
n.a. NBS-containing resistance-like protein [Medicago truncatula] gi|357469529|ref|XP_003605049.1| chr0 113547726 113556094 -
2 domain predictions
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Lj0g3v0223409.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr0 115180723 115187482 +
2 domain predictions
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Lj0g3v0236679.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] gi|356505465|ref|XP_003521511.1| chr0 122663961 122665209 -
3 domain predictions
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Lj0g3v0243579.1
n.a. PREDICTED: general transcription factor IIE subunit 1-like [Cicer arietinum] gi|502151714|ref|XP_004508577.1| chr0 126357693 126358882 -
3 domain predictions
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Lj0g3v0245179.1
n.a. n.a. chr0 127102402 127102964 +
2 domain predictions
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Lj0g3v0247399.1
n.a. resistance protein MG63 [Glycine max] gi|9965107|gb|AAG09953.1|AF175398_1 chr0 128195992 128203883 -
2 domain predictions
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Lj0g3v0247409.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 128197093 128203883 -
2 domain predictions
 –
Lj0g3v0247409.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 128197093 128203883 -
2 domain predictions
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Lj0g3v0249439.1
n.a. PREDICTED: 40S ribosomal protein S19-1-like [Cicer arietinum] gi|502180159|ref|XP_004516579.1| chr0 129248048 129249952 +
2 domain predictions
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Lj0g3v0251759.1
n.a. Anaphase-promoting complex subunit [Medicago truncatula] gi|357474951|ref|XP_003607761.1| chr0 130568675 130573227 -
3 domain predictions
 –
Lj0g3v0251759.2
n.a. PREDICTED: anaphase-promoting complex subunit 2-like [Glycine max] gi|356537932|ref|XP_003537460.1| chr0 130568675 130579177 -
3 domain predictions
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Lj0g3v0252649.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545122|ref|XP_003540994.1| chr0 131052396 131060830 +
2 domain predictions
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Lj0g3v0255889.1
n.a. NBS-LRR resistance-like protein [Medicago truncatula] gi|357521387|ref|XP_003630982.1| chr0 132878474 132884068 +
2 domain predictions
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Lj0g3v0259009.2
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468521|ref|XP_003604545.1| chr0 134553318 134556859 +
2 domain predictions
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Lj0g3v0259819.1
n.a. PREDICTED: transcription factor-like protein DPB-like [Glycine max] gi|356497355|ref|XP_003517526.1| chr0 135030262 135036011 -
3 domain predictions
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Lj0g3v0259819.2
n.a. PREDICTED: transcription factor-like protein DPB-like [Glycine max] gi|356497355|ref|XP_003517526.1| chr0 135030427 135036011 -
3 domain predictions
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Lj0g3v0267779.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr0 138752065 138765617 -
2 domain predictions
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Lj0g3v0269689.1
n.a. PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max] gi|356577865|ref|XP_003557042.1| chr0 139717636 139719522 +
3 domain predictions
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Lj0g3v0271019.1
n.a. PREDICTED: TMV resistance protein N-like isoform X4 [Cicer arietinum] gi|502155889|ref|XP_004510228.1| chr0 140376330 140377285 -
2 domain predictions
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Lj0g3v0273259.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr0 141600345 141607745 -
2 domain predictions
 –
Lj0g3v0273259.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| chr0 141600345 141607745 -
2 domain predictions
 –
Lj0g3v0273599.1
n.a. PREDICTED: isoliquiritigenin 2'-O-methyltransferase-like [Glycine max] gi|356532221|ref|XP_003534672.1| chr0 141817371 141818525 +
3 domain predictions
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Lj0g3v0273649.1
n.a. PREDICTED: cell division control protein 6 homolog [Cicer arietinum] gi|502129264|ref|XP_004500243.1| chr0 141850761 141856471 -
3 domain predictions
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Lj0g3v0275419.1
n.a. NBS resistance protein-like protein [Medicago truncatula] gi|357469163|ref|XP_003604866.1| chr0 142856976 142868107 -
2 domain predictions
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Lj0g3v0277609.1
n.a. PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 1 [Glycine max] gi|356517460|ref|XP_003527405.1| chr0 144103283 144104841 -
3 domain predictions
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Lj0g3v0282429.1
n.a. Electron carriers,protein disulfide oxidoreductases [Theobroma cacao] gi|508724219|gb|EOY16116.1| chr0 146417693 146422851 +
3 domain predictions
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Lj0g3v0282429.2
n.a. Electron carriers,protein disulfide oxidoreductases [Theobroma cacao] gi|508724219|gb|EOY16116.1| chr0 146417693 146422851 +
3 domain predictions
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Lj0g3v0282859.1
n.a. PREDICTED: la-related protein 7-like [Cicer arietinum] gi|502078710|ref|XP_004486031.1| chr0 146608676 146609224 -
3 domain predictions
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Lj0g3v0284939.1
n.a. glutaredoxin-related protein [Arabidopsis thaliana] gi|18399411|ref|NP_566405.1| chr0 147822030 147823550 -
3 domain predictions
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Lj0g3v0286429.1
n.a. 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Glycine max] gi|371502138|ref|NP_001243073.1| chr0 148801251 148809738 -
3 domain predictions
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Lj0g3v0286559.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357469545|ref|XP_003605057.1| chr0 148873521 148877879 +
2 domain predictions
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Lj0g3v0292459.1
n.a. PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus] gi|449438797|ref|XP_004137174.1| chr0 151802601 151806360 -
3 domain predictions
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Lj0g3v0292879.1
n.a. PREDICTED: meiotic recombination protein SPO11-1-like [Cicer arietinum] gi|502100203|ref|XP_004491659.1| chr0 152010336 152013476 +
2 domain predictions
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Lj0g3v0292879.2
n.a. Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1| chr0 152010336 152014688 +
2 domain predictions
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Lj0g3v0293239.1
n.a. Disease resistance-like protein [Medicago truncatula] gi|357486939|ref|XP_003613757.1| chr0 152237603 152239296 -
2 domain predictions
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Lj0g3v0297389.1
n.a. n.a. chr0 154572869 154582454 -
2 domain predictions
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Lj0g3v0297389.3
n.a. n.a. chr0 154572869 154582454 -
2 domain predictions
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Lj0g3v0302489.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 157373359 157379450 -
2 domain predictions
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Lj0g3v0302489.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356561802|ref|XP_003549167.1| chr0 157375434 157379450 -
2 domain predictions
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Lj0g3v0302529.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr0 157389483 157393887 -
2 domain predictions
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Lj0g3v0302529.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356573485|ref|XP_003554889.1| chr0 157389735 157393887 -
2 domain predictions
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Lj0g3v0302799.1
n.a. EBP1 [Ammopiptanthus mongolicus] gi|99083509|gb|ABF66654.1| chr0 157549996 157569623 +
3 domain predictions
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Lj0g3v0302799.3
n.a. EBP1 [Ammopiptanthus mongolicus] gi|99083509|gb|ABF66654.1| chr0 157562228 157569623 +
3 domain predictions
 –