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Lj0g3v0259819.2

Overview

Field Value
Gene ID Lj0g3v0259819
Transcript ID Lj0g3v0259819.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor-like protein DPB-like [Glycine max] gi|356497355|ref|XP_003517526.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 97 97 – –
PIRSF
PIRSF009404
4 222 219 2.40E-85
IPR015648
PANTHER
PTHR12548
19 222 204 3.40E-114
IPR015648
Gene3D
G3DSA:1.10.10.10
87 179 93 1.00E-44
IPR011991
SMART
SM01372
91 174 84 2.40E-32
IPR003316
Pfam
PF02319
93 174 82 9.10E-24
IPR003316
SUPERFAMILY
SSF46785
94 175 82 7.75E-21
IPR011991
SUPERFAMILY
SSF144074
180 222 43 3.40E-10 –
Pfam
PF08781
182 222 41 2.90E-09
IPR014889
Coils
Coil
183 210 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0005667
Cellular component Transcription factor complex A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0051726
Biological process Regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.
Subterm of
Regulates

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0259819.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0259819.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.