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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0223409 |
| Transcript ID | Lj0g3v0223409.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: TMV resistance protein N-like [Glycine max] gi|356570335|ref|XP_003553345.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 616 | 616 | 0 | – | |
| PANTHER | 1 | 616 | 616 | 0 | – | |
| Phobius | 1 | 753 | 753 | – | – | |
| SUPERFAMILY | 4 | 154 | 151 | 9.81E-41 | ||
| Gene3D | 9 | 145 | 137 | 6.00E-23 | ||
| ProSiteProfiles | 10 | 151 | 142 | 28.469 | ||
| SMART | 11 | 151 | 141 | 2.80E-36 | ||
| Pfam | 12 | 175 | 164 | 2.70E-44 | ||
| SUPERFAMILY | 178 | 440 | 263 | 4.78E-63 | ||
| CDD | 189 | 329 | 141 | 1.04E-05 | – | |
| Pfam | 195 | 449 | 255 | 3.90E-33 | ||
| SMART | 209 | 345 | 137 | 1.50E-04 | ||
| Gene3D | 210 | 352 | 143 | 1.10E-10 | ||
| PRINTS | 212 | 227 | 16 | 1.00E-21 | – | |
| PRINTS | 288 | 302 | 15 | 1.00E-21 | – | |
| PRINTS | 381 | 395 | 15 | 1.00E-21 | – | |
| SUPERFAMILY | 416 | 524 | 109 | 2.99E-23 | ||
| PRINTS | 553 | 569 | 17 | 1.00E-21 | – | |
| Gene3D | 596 | 650 | 55 | 4.00E-05 | ||
| Phobius | 754 | 774 | 21 | – | – | |
| TMHMM | 755 | 777 | 23 | – | – | |
| Phobius | 775 | 785 | 11 | – | – | |
| TMHMM | 784 | 806 | 23 | – | – | |
| Phobius | 786 | 806 | 21 | – | – | |
| Phobius | 807 | 817 | 11 | – | – | |
| TMHMM | 816 | 837 | 22 | – | – | |
| Phobius | 818 | 837 | 20 | – | – | |
| Phobius | 838 | 848 | 11 | – | – | |
| Phobius | 849 | 867 | 19 | – | – | |
| TMHMM | 850 | 867 | 18 | – | – | |
| Phobius | 868 | 886 | 19 | – | – | |
| Phobius | 887 | 907 | 21 | – | – | |
| TMHMM | 887 | 909 | 23 | – | – | |
| Phobius | 908 | 917 | 10 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of Lj0g3v0223409.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0223409.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.