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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017853
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 769 results. Now displaying 6 of 16 with 50 rows per page. This search has taken 5.808s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v1683270.1
n.a. PREDICTED: heparanase-like protein 1-like [Glycine max] gi|356562599|ref|XP_003549557.1| chr4 24449292 24453748 +
2 domain predictions
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Lj4g3v1881020.1
n.a. PREDICTED: LOW QUALITY PROTEIN: glucan endo-1,3-beta-glucosidase 14-like [Glycine max] gi|356548477|ref|XP_003542628.1| chr4 26276602 26279937 +
2 domain predictions
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Lj4g3v1881800.1
n.a. n.a. chr4 26701935 26705511 +
2 domain predictions
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Lj4g3v1881810.1
n.a. PREDICTED: probable galactinol--sucrose galactosyltransferase 6-like isoform X2 [Cicer arietinum] gi|502151481|ref|XP_004508462.1| chr4 26702504 26704919 -
2 domain predictions
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Lj4g3v1946680.1
n.a. PREDICTED: heparanase-like protein 3-like [Glycine max] gi|356548541|ref|XP_003542659.1| chr4 27241280 27244528 -
2 domain predictions
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Lj4g3v1946680.2
n.a. PREDICTED: heparanase-like protein 3-like [Glycine max] gi|356548541|ref|XP_003542659.1| chr4 27241280 27245208 -
2 domain predictions
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Lj4g3v2141350.1
n.a. PREDICTED: beta-galactosidase-like [Glycine max] gi|356564794|ref|XP_003550633.1| chr4 29734033 29739817 +
2 domain predictions
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Lj4g3v2214670.1
n.a. PREDICTED: beta-galactosidase-like [Glycine max] gi|356545784|ref|XP_003541315.1| chr4 30331370 30335477 +
2 domain predictions
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Lj4g3v2215530.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Glycine max] gi|356545800|ref|XP_003541322.1| chr4 30754278 30756129 -
2 domain predictions
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Lj4g3v2253540.1
n.a. PREDICTED: LOW QUALITY PROTEIN: beta-glucosidase-like SFR2, chloroplastic-like [Cicer arietinum] gi|502150768|ref|XP_004508114.1| chr4 31255003 31260093 +
2 domain predictions
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Lj4g3v2298200.1
n.a. PREDICTED: heparanase-like protein 3-like [Cicer arietinum] gi|502087386|ref|XP_004488517.1| chr4 32090995 32092454 -
2 domain predictions
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Lj4g3v2400910.1
n.a. PREDICTED: beta-glucosidase 46-like [Glycine max] gi|356521969|ref|XP_003529622.1| chr4 33227337 33232315 +
2 domain predictions
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Lj4g3v2400910.2
n.a. PREDICTED: beta-glucosidase 46-like [Glycine max] gi|356521969|ref|XP_003529622.1| chr4 33228903 33232315 +
2 domain predictions
 –
Lj4g3v2603610.1
n.a. PREDICTED: beta-galactosidase 9-like [Cicer arietinum] gi|502140836|ref|XP_004504354.1| chr4 34829667 34846560 +
2 domain predictions
 –
Lj4g3v2603610.2
n.a. PREDICTED: beta-galactosidase 9-like [Cicer arietinum] gi|502140836|ref|XP_004504354.1| chr4 34831292 34846560 +
2 domain predictions
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Lj4g3v2604040.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 4-like [Glycine max] gi|356525258|ref|XP_003531243.1| chr4 35036293 35042672 -
2 domain predictions
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Lj4g3v2717180.1
n.a. PREDICTED: endoglucanase E1-like [Glycine max] gi|356511059|ref|XP_003524249.1| chr4 36618525 36622316 -
2 domain predictions
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Lj4g3v2728280.1
n.a. Glycoside hydrolase, clan GH-D; Ricin B-related lectin [Medicago truncatula] gi|124359617|gb|ABD32283.2| chr4 36660214 36665891 +
2 domain predictions
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Lj4g3v2728280.2
n.a. Glycoside hydrolase, clan GH-D; Ricin B-related lectin [Medicago truncatula] gi|124359617|gb|ABD32283.2| chr4 36660214 36665891 +
2 domain predictions
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Lj4g3v2820020.1
n.a. PREDICTED: probable glucan 1,3-beta-glucosidase A-like [Glycine max] gi|356525499|ref|XP_003531362.1| chr4 37611645 37614172 +
2 domain predictions
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Lj4g3v2826850.3
n.a. PREDICTED: beta-galactosidase 6-like [Glycine max] gi|356527530|ref|XP_003532362.1| chr4 37911394 37918483 -
2 domain predictions
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Lj4g3v3014460.1
n.a. PREDICTED: beta-amylase 1, chloroplastic-like [Glycine max] gi|356527702|ref|XP_003532447.1| chr4 40079918 40083053 -
2 domain predictions
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Lj4g3v3015110.2
n.a. isoamylase-type starch-debranching enzyme 1 [Phaseolus vulgaris] gi|139867053|dbj|BAF52941.1| chr4 40347548 40356591 -
2 domain predictions
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Lj4g3v3015110.3
n.a. isoamylase-type starch-debranching enzyme 1 [Phaseolus vulgaris] gi|139867053|dbj|BAF52941.1| chr4 40347548 40356591 -
2 domain predictions
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Lj4g3v3042780.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Glycine max] gi|356511391|ref|XP_003524410.1| chr4 40646275 40648000 -
2 domain predictions
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Lj4g3v3112890.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 3-like [Glycine max] gi|356511321|ref|XP_003524375.1| chr4 41434974 41439261 -
2 domain predictions
 –
Lj4g3v3112890.2
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 3-like [Glycine max] gi|356511321|ref|XP_003524375.1| chr4 41435433 41439261 -
2 domain predictions
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Lj5g3v0102630.1
n.a. n.a. chr5 740112 743483 +
2 domain predictions
 –
Lj5g3v0102640.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Glycine max] gi|356552118|ref|XP_003544417.1| chr5 740966 745071 -
2 domain predictions
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Lj5g3v0102640.2
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Glycine max] gi|356552118|ref|XP_003544417.1| chr5 740966 745071 -
2 domain predictions
 –
Lj5g3v0102640.3
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Glycine max] gi|356552118|ref|XP_003544417.1| chr5 740966 745071 -
2 domain predictions
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Lj5g3v0134260.1
n.a. beta galactosidase [Vigna radiata] gi|7682680|gb|AAF67342.1| chr5 1446134 1447295 +
2 domain predictions
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Lj5g3v0134270.1
n.a. PREDICTED: beta-galactosidase 5-like [Cicer arietinum] gi|502126169|ref|XP_004499206.1| chr5 1447290 1452725 +
2 domain predictions
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Lj5g3v0255820.1
n.a. PREDICTED: probable alpha-amylase 2-like isoform X1 [Cicer arietinum] gi|502126458|ref|XP_004499314.1| chr5 2152022 2155642 +
2 domain predictions
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Lj5g3v0255820.2
n.a. PREDICTED: probable alpha-amylase 2-like isoform X1 [Cicer arietinum] gi|502126458|ref|XP_004499314.1| chr5 2152024 2155642 +
2 domain predictions
 –
Lj5g3v0290420.1
n.a. Alpha-amylase [Medicago truncatula] gi|357437821|ref|XP_003589186.1| chr5 2480619 2486978 +
2 domain predictions
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Lj5g3v0290430.1
n.a. PREDICTED: alpha-amylase-like [Cicer arietinum] gi|502125779|ref|XP_004499060.1| chr5 2489326 2490842 +
2 domain predictions
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Lj5g3v0391400.1
n.a. beta-glucosidase D4 [Lotus japonicus] gi|208081617|gb|ACD65509.2| chr5 3636740 3643234 -
2 domain predictions
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Lj5g3v0391400.2
n.a. beta-glucosidase D4 [Lotus japonicus] gi|208081617|gb|ACD65509.2| chr5 3636740 3643234 -
2 domain predictions
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Lj5g3v0391410.1
n.a. beta-glucosidase D4 [Lotus japonicus] gi|208081617|gb|ACD65509.2| chr5 3637105 3643197 -
2 domain predictions
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Lj5g3v0525250.1
n.a. PREDICTED: chitotriosidase-1-like [Cicer arietinum] gi|502125066|ref|XP_004498784.1| chr5 5524517 5525463 +
2 domain predictions
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Lj5g3v0525260.1
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356563922|ref|XP_003550206.1| chr5 5524790 5531765 +
2 domain predictions
 –
Lj5g3v0525260.2
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356563922|ref|XP_003550206.1| chr5 5524790 5530721 +
2 domain predictions
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Lj5g3v0526340.1
n.a. PREDICTED: acidic mammalian chitinase-like [Glycine max] gi|356563922|ref|XP_003550206.1| chr5 5565007 5566164 -
2 domain predictions
 –
Lj5g3v0553280.1
n.a. PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Glycine max] gi|356561923|ref|XP_003549226.1| chr5 6626932 6631854 -
2 domain predictions
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Lj5g3v1190130.1
n.a. PREDICTED: acidic endochitinase-like [Glycine max] gi|356567519|ref|XP_003551966.1| chr5 19188445 19189344 +
2 domain predictions
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Lj5g3v1235710.1
n.a. PREDICTED: alpha-galactosidase-like [Glycine max] gi|356533703|ref|XP_003535399.1| chr5 19953298 19955693 -
2 domain predictions
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Lj5g3v1235710.2
n.a. PREDICTED: alpha-galactosidase-like [Glycine max] gi|356574823|ref|XP_003555544.1| chr5 19953298 19958684 -
2 domain predictions
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Lj5g3v1494660.1
n.a. PREDICTED: mannosylglycoprotein endo-beta-mannosidase-like [Glycine max] gi|356574941|ref|XP_003555601.1| chr5 21668374 21673942 +
2 domain predictions
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Lj5g3v1600680.1
n.a. Beta xylosidase [Medicago truncatula] gi|357442285|ref|XP_003591420.1| chr5 23126702 23150859 +
2 domain predictions
 –