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Lj4g3v2717180.1

Overview

Field Value
Gene ID Lj4g3v2717180
Transcript ID Lj4g3v2717180.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: endoglucanase E1-like [Glycine max] gi|356511059|ref|XP_003524249.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-noTM_EUK
1 41 41 – –
Phobius
SIGNAL_PEPTIDE
1 44 44 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 23 23 – –
PANTHER
PTHR31263:SF0
21 425 405 3.70E-248 –
PANTHER
PTHR31263
21 425 405 3.70E-248 –
Phobius
SIGNAL_PEPTIDE_H_REGION
24 35 12 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
36 44 9 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
45 576 532 – –
Gene3D
G3DSA:3.20.20.80
47 401 355 2.30E-69
IPR013781
SUPERFAMILY
SSF51445
49 400 352 1.08E-62
IPR017853
Pfam
PF00150
91 368 278 1.20E-26
IPR001547
SUPERFAMILY
SSF50370
419 546 128 3.21E-10
IPR000772
CDD
cd00161
422 528 107 7.55E-05 –
Gene3D
G3DSA:2.80.10.50
430 528 99 1.30E-04 –
PANTHER
PTHR31263
471 552 82 3.70E-248 –
PANTHER
PTHR31263:SF0
471 552 82 3.70E-248 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj4g3v2717180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2717180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.