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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023753
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 223 results. Now displaying 3 of 5 with 50 rows per page. This search has taken 5.479s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3070860.1
n.a. Polyamine oxidase [Medicago truncatula] gi|357494059|ref|XP_003617318.1| chr2 39512407 39514030 -
2 domain predictions
2 GO terms
Lj2g3v3070870.1
n.a. PREDICTED: probable polyamine oxidase 2-like [Glycine max] gi|356501421|ref|XP_003519523.1| chr2 39512852 39517302 -
3 domain predictions
2 GO terms
Lj2g3v3070870.2
n.a. Polyamine oxidase [Medicago truncatula] gi|357494059|ref|XP_003617318.1| chr2 39512852 39516722 -
2 domain predictions
2 GO terms
Lj3g3v0370530.1
n.a. PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [Glycine max] gi|356557362|ref|XP_003546985.1| chr3 2975299 2986043 -
3 domain predictions
2 GO terms
Lj3g3v0463700.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356531543|ref|XP_003534337.1| chr3 5338168 5341874 -
3 domain predictions
2 GO terms
Lj3g3v0463700.2
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Glycine max] gi|356531543|ref|XP_003534337.1| chr3 5338168 5340576 -
3 domain predictions
2 GO terms
Lj3g3v0718330.1
n.a. CCP [Medicago truncatula] gi|357463063|ref|XP_003601813.1| chr3 7805472 7810806 +
3 domain predictions
2 GO terms
Lj3g3v0824920.1
n.a. PREDICTED: polyamine oxidase 1-like [Cicer arietinum] gi|502128056|ref|XP_004499921.1| chr3 10335232 10346872 -
2 domain predictions
2 GO terms
Lj3g3v0966670.1
n.a. FAD/NAD(P)-binding oxidoreductase family protein isoform 1 [Theobroma cacao] gi|508721934|gb|EOY13831.1| chr3 13204131 13211315 -
3 domain predictions
2 GO terms
Lj3g3v1010900.1
n.a. PREDICTED: thiamine thiazole synthase, chloroplastic-like [Cicer arietinum] gi|502140800|ref|XP_004504342.1| chr3 13381905 13384667 -
3 domain predictions
2 GO terms
Lj3g3v1193490.1
n.a. PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Glycine max] gi|356547120|ref|XP_003541965.1| chr3 15849837 15851010 +
3 domain predictions
2 GO terms
Lj3g3v1249990.1
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1| chr3 16204138 16208700 -
2 domain predictions
2 GO terms
Lj3g3v1249990.3
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1| chr3 16206856 16208700 -
2 domain predictions
2 GO terms
Lj3g3v2040180.1
n.a. Mandelonitrile lyase [Medicago truncatula] gi|357467707|ref|XP_003604138.1| chr3 26246413 26248521 +
3 domain predictions
2 GO terms
Lj3g3v2693000.1
n.a. PREDICTED: protein HOTHEAD-like [Cicer arietinum] gi|502156242|ref|XP_004510377.1| chr3 32795706 32804632 -
3 domain predictions
2 GO terms
Lj3g3v2873580.1
n.a. PREDICTED: external NADH-ubiquinone oxidoreductase 1, mitochondrial-like [Glycine max] gi|356542881|ref|XP_003539893.1| chr3 35376473 35382563 +
4 domain predictions
2 GO terms
Lj3g3v2873590.1
n.a. PREDICTED: NAD(P)H dehydrogenase B3, mitochondrial-like [Cicer arietinum] gi|502148665|ref|XP_004507222.1| chr3 35384268 35385400 +
4 domain predictions
2 GO terms
Lj3g3v2873600.1
n.a. PREDICTED: NAD(P)H dehydrogenase B3, mitochondrial-like [Cicer arietinum] gi|502148665|ref|XP_004507222.1| chr3 35386167 35386494 +
4 domain predictions
2 GO terms
Lj3g3v2948580.1
n.a. PREDICTED: apoptosis-inducing factor homolog A-like [Cicer arietinum] gi|502145876|ref|XP_004506219.1| chr3 36736821 36739222 -
4 domain predictions
2 GO terms
Lj3g3v2948590.1
n.a. PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max] gi|356539209|ref|XP_003538092.1| chr3 36741130 36744169 -
4 domain predictions
2 GO terms
Lj3g3v3189630.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39390238 39392336 +
3 domain predictions
2 GO terms
Lj3g3v3189640.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39396640 39398724 +
3 domain predictions
2 GO terms
Lj3g3v3752100.1
n.a. PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Glycine max] gi|356529899|ref|XP_003533524.1| chr3 45354532 45355027 +
3 domain predictions
2 GO terms
Lj3g3v3752110.1
n.a. PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Glycine max] gi|356529899|ref|XP_003533524.1| chr3 45356106 45356651 +
3 domain predictions
2 GO terms
Lj4g3v0282260.1
n.a. Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula] gi|357450967|ref|XP_003595760.1| chr4 3391476 3393214 -
3 domain predictions
2 GO terms
Lj4g3v0282270.1
n.a. n.a. chr4 3391693 3393214 -
3 domain predictions
2 GO terms
Lj4g3v0282300.1
n.a. Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula] gi|357450967|ref|XP_003595760.1| chr4 3393425 3393774 -
3 domain predictions
2 GO terms
Lj4g3v0282310.1
n.a. n.a. chr4 3393425 3393774 -
3 domain predictions
2 GO terms
Lj4g3v0336870.1
n.a. PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic-like [Glycine max] gi|356512089|ref|XP_003524753.1| chr4 4207267 4212132 -
3 domain predictions
2 GO terms
Lj4g3v0385800.1
n.a. PREDICTED: rab GDP dissociation inhibitor alpha-like [Glycine max] gi|356521229|ref|XP_003529259.1| chr4 4966971 4969503 +
3 domain predictions
2 GO terms
Lj4g3v0412640.1
n.a. PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1| chr4 5354437 5372665 +
3 domain predictions
2 GO terms
Lj4g3v0412640.2
n.a. PREDICTED: squalene monooxygenase-like [Cicer arietinum] gi|502142293|ref|XP_004504886.1| chr4 5356051 5373538 +
3 domain predictions
2 GO terms
Lj4g3v0445550.1
n.a. External NADH-ubiquinone oxidoreductase [Medicago truncatula] gi|357475923|ref|XP_003608247.1| chr4 5883185 5888896 -
4 domain predictions
2 GO terms
Lj4g3v0447890.1
n.a. PREDICTED: probable NADH dehydrogenase-like [Glycine max] gi|356521315|ref|XP_003529302.1| chr4 6025388 6031130 +
4 domain predictions
2 GO terms
Lj4g3v0806630.1
n.a. FAD-dependent oxidoreductase family protein [Theobroma cacao] gi|508699655|gb|EOX91551.1| chr4 12649414 12651533 +
3 domain predictions
2 GO terms
Lj4g3v0948900.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|356498373|ref|XP_003518027.1| chr4 13897578 13903057 +
3 domain predictions
2 GO terms
Lj4g3v1329110.1
n.a. PREDICTED: protein HOTHEAD-like [Glycine max] gi|356514078|ref|XP_003525734.1| chr4 19756023 19766919 -
3 domain predictions
2 GO terms
Lj4g3v1683220.1
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr4 24416741 24420268 -
3 domain predictions
2 GO terms
Lj4g3v1683220.2
n.a. PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9-like [Cicer arietinum] gi|502178463|ref|XP_004516260.1| chr4 24416741 24420268 -
3 domain predictions
2 GO terms
Lj4g3v2215030.1
n.a. PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max] gi|356545788|ref|XP_003541317.1| chr4 30501361 30506251 +
3 domain predictions
2 GO terms
Lj4g3v2251430.1
n.a. PREDICTED: dihydrolipoyl dehydrogenase, mitochondrial-like [Cicer arietinum] gi|502150750|ref|XP_004508105.1| chr4 31176328 31178869 +
4 domain predictions
2 GO terms
Lj4g3v2268720.1
n.a. Dihydrolipoyl dehydrogenase [Medicago truncatula] gi|357478937|ref|XP_003609754.1| chr4 31687060 31692896 +
4 domain predictions
2 GO terms
Lj4g3v2689690.1
n.a. PREDICTED: rab GDP dissociation inhibitor alpha-like [Cicer arietinum] gi|502140390|ref|XP_004504200.1| chr4 36192961 36198098 -
3 domain predictions
2 GO terms
Lj4g3v2825560.1
n.a. PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum] gi|502183352|ref|XP_004517119.1| chr4 37814708 37822585 +
3 domain predictions
2 GO terms
Lj4g3v2825560.2
n.a. PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum] gi|502183352|ref|XP_004517119.1| chr4 37814708 37822585 +
3 domain predictions
2 GO terms
Lj4g3v2825560.4
n.a. tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Medicago truncatula] gi|357520027|ref|XP_003630302.1| chr4 37818133 37822585 +
2 domain predictions
2 GO terms
Lj4g3v2827910.1
n.a. PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502139769|ref|XP_004503895.1| chr4 37948896 37953135 +
4 domain predictions
2 GO terms
Lj4g3v2827910.2
n.a. PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502139769|ref|XP_004503895.1| chr4 37948912 37953135 +
4 domain predictions
2 GO terms
Lj4g3v2990090.1
n.a. PREDICTED: monodehydroascorbate reductase, chloroplastic-like [Cicer arietinum] gi|502139186|ref|XP_004503675.1| chr4 39497401 39503327 +
4 domain predictions
2 GO terms
Lj4g3v3060470.2
n.a. PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max] gi|356513151|ref|XP_003525277.1| chr4 40796529 40801649 -
3 domain predictions
2 GO terms