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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2825560 |
| Transcript ID | Lj4g3v2825560.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Medicago truncatula] gi|357520027|ref|XP_003630302.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| Phobius | 6 | 16 | 11 | – | – | |
| PANTHER | 13 | 429 | 417 | 0 | – | |
| PANTHER | 13 | 429 | 417 | 0 | – | |
| TIGRFAM | 14 | 408 | 395 | 2.80E-159 | ||
| Pfam | 17 | 187 | 171 | 1.50E-66 | ||
| Phobius | 17 | 24 | 8 | – | – | |
| Phobius | 25 | 446 | 422 | – | – | |
| Gene3D | 52 | 71 | 20 | 4.30E-06 | ||
| ProSitePatterns | 62 | 76 | 15 | – | ||
| Gene3D | 139 | 206 | 68 | 4.30E-06 | ||
| Pfam | 190 | 403 | 214 | 3.80E-64 | ||
| SMART | 333 | 404 | 72 | 8.00E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA wobble uridine modification | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj4g3v2825560.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2825560.4, powered by CORGI.
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