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LotjaGi1g1v0195000.1

Overview

Field Value
Gene ID LotjaGi1g1v0195000
Transcript ID LotjaGi1g1v0195000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; TrEMBL-Plants: tr|A7DX10|A7DX10_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0195000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:38666516..38672224) extracted from Lotus japonicus Gifu genome v1.2.

ATTTGCCACTTCCAGGGACCGTGAGAGACATTTTAGAAGTTTAGGGACGAAGTTGAAGGCGGTGGACACTTTCAGGGACG AACTTGGCTATTTACCCCATGAAATTTCAAGTCATAAAAGATGTCCACGTTAGTAGATTAGTGAGCACATTATCACTTAA TTGATGAGAAGGATGACATGTGCATTTTCAAAAAATTGAGGATATGATGATTAATTTATTATTTTGTAGGGACCAAAAAA ATATTTATCTCGTGCAATGTTTTCAACTTGGGCCTGCGTTCTTATTGTTAACCTACTGCACAATGGATCTACTGCACAAG CAACAACGCGTAGATACGACGACGACAGAAGCAAAATGAAACGCTAACCTCGGTTCTGTACTGGTGATTCCGCTTTACGA ATTTCTCAGCCTGTGACTTTCCTCTTGATTCTGTGCTTTGAGGTAAAGAAGCTCATATCTTTAATCTCTACTATGTTCTT AGAGAAGAGTAGAGTCCCTTTGTGCATAAGGCTCTGTTTATGAGTTGGATTTTGGATGCTAGGGAAGGGAAGGGAAATCA GAGACTTATGACAAGCTTTCCCCTTGTTTGATTTGTTTTTTAAGAGAAGAGTTTAGGAAATTTCTGAAAACCCTCTAATA GCTTTCTTTGATTATTTTGTTGAGTTCTCCTGAATTGGGTGCTTTTGGGTAAGGTTTCGGAAAACCCTCTAATAGCTAGG GAAGGTTTCGTTTTTCTATGAGCTAATACTCTTTGTTTTATTTCTTCTTTTTTGGTTTCCATTGGTGGTTTTCTTATTCC TTTGTGTACGTCTCTTCGTTCTTTTAATTTGTTTTGTCCAAAAAATTGAAATAGTTGAATTTCTACACTTACTTTTTACT GTGCTTTGGTTGTTTGTATCTTCCTTCTTCTAATTTGTTTACAGTGAGTTTCTATTTGCCATGACTTTGGTTGTCTGTCA TTCTTGTGTTGCTTTATAGTTAGGCTTTATTTGCCATGTATTTTACTGGTTCGTTTTGGAAGTTACAATTGGTTGCTTCA CTTAATCAGTGGTAATCATCAAGAGTTTTGAGAACAATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGG GAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTCTAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTA CTTGCACCTATGTTAAAGGTAGAAATTTTTCATCATTTATTGGTACCTTAGAACTTATGTTCAGTTTCTTTCATTTTTGG TTGTTCAGAATGACATTGATTTATGGCTTCTTATTTTGCACAGCAAGGCATATCTTATGTGAGAAACAAGGTAAGATTAA CGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAGCAATGGAGATAAAGTCCCCCCAGCAGAGTTTGCAAAGGTATTTT TTGTTCCTGCTGGAGGTTATACATTGATTTTTGTTCTTGTTTCTTTTCCAAATCTTCATTCCGCCCCTCCCGCAACTGCC TTTTGTGAGTAATGTGATATTTGATTAGAGAAAAAACACTCTTTTGAACACAATTGGCTTGTTTTTAAAAAAGTCGACAC ATTTTTCTAAATGAGAGGCTAAAAAAGTGTGGAAGTATGCATTCAAAAGACTGTATTGTTAGCACTCCAAAACAAGATAC TTGGTCATTTAAAACTAATATAGAAATAGAAATATTGTCACTTCAATGGTTTATCATCCATAATATTTCATTGATCTCAC AGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAAAGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGGAAAGATGGCT GGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACGTAGTTCTCTTTCTT GTGTACACTAATTGTTATTATCTTGCCGAATCCCAATTCCTTATCCTCACATTATCACCTGCTAACCTTTGCTTGGATGA TGATGCAGGCATGGCTACCATATCATCTTATCTGAAGGAAGAAAGAACTGATCCCTGAATAAAAAGAAATTGAGTCTCAA CGGCACTAAAGCACTTTAGTTATCTGGTTAAATGATCGGATGTTGGTTCCTTTCTTTTTTGTGATTCTGGTTGATAATGT AAAACCAACAGTTTGCCATATGTATGTTGATCTTGCTTTCCAGTACTTTGACGATTGAGAGCATATATGTAAATGTGGAT GGTTTCACTATATTTGCGAAGTTTATTACTGTTTTAGTTCCATTCAATTATAGTTTTCAGTTAAAACTTGTGCTTCCAGT TAGTTTAATTAAGATGGACCGAGCAGAAAGGGTGTCCATTCATGTTTAGCACAATGAATGGAGAATGATGTCAACCATCA TTTCAAAATGGAAAGCATTACTTGTACAATTTATACAATTATGAGAAAGAAATGAAGAGGATAAAGAAAAGATTAGATGG TAATGATAGTTAGAGAGACTATTTTGTAAAAAGTGATCATATAATTTATGTATGAGGTTATGTTTGGATACAGGTTAGCA TTAAGGTAAACAAATTTTAACATTTTGAATGGAAAATGATGGCAACCATCATTTCAAAATGGAAAACATTAGATGGTTAT GATAGTTAGAGAGACTGTTTTGTAAAAAGTGATCATGAGGTTATGTTTGGATACCGGTTAGCATTAAGGTAAACAAATTT TAACATTTTGAACTAAAGAGTAAACGTGTATTGAGATGAAAGTCCGTTGACATTGTTGTCCTGTTATCCAAACATACACC AAGTAATGTACTGTTTTTCAAAGCAATTCAATCTGAAAGAAAGATATTCTGATAACAGTAAGGTGCTAGTATATTATGAA CCCAATAACTGTGAAACAATGATGGCACTTAAAAAGTTCTATTTTATGGTTGCTATAGGGAAAGAAAAAAAAAATCAACA ACTAATTCTATCATACAACAAAATTGGCAGTACTTCTAACAGAGTTTCGACAGTCATGGCATTCATGACTATAATAATGA CTAGTTAACCATGATTATCTACGAGCTTTAGACCCCAGCTCATATCCTCACAATGCCTTACATGCGGAACGAGCGCACCG GTGTCAGTTCCTCTTTTAGCCTTGCAATCATAGAAGGGAGGAGCATGGAAGCATGGTTCCATCGACATGGCGCGTTGACA AGGAGGGTCAGGGGCTGTTCCATTCTCAGGCTTGTAGAGTATCCATGGTTTTAAACCTCCAAGCCCCTGCGCGACGTAAC CGAAAGTAGACCATGAGCTAGTGACTAACATGTCAGTTAAGCTCAAGAGATACATTTCTGCCCAAGCTTTTTGGTTGTGC ATCTGCTTCTCTGTTTGCTGATATTCCTCATGGCTTGGCTGGTAAATGCCCACAACTTCTCCTGTCACAGTGGGATATTC CCAGTACATGTCTCTCACCATTTCAGAATAACCCGAGCTTAAGGATGTCATCAGCACCGCTTTTGACTTCGGCTTCCCTG ATGAACTGATAATATTCTGACCCCTGCTAACATCAGGCAAAATATTCTCCTTCAAAGCACAAGCTATGATCTGATCCAGT ATATGTTGAAATGGGCCACTTCCAGTGTCAAACACTCTGATCTGGATGCCTACTCTTTCATCAGCACTAGCTAAATAAGG TTGGTAGTATCTGAGAACAAGTCCCCATACTGTGTTGGTGGGGTGGAATAGATATCTGCCTAAGAAATGGAAAACTGTTT CCTTGTTTGGAAATAAGTCACTCAGTTCCTGCTGGAAAGATGGCATCAAGAACAGAGATGGGACAAAGTAATTATCAGTT CTCACCACTAGCCAAGGAACTTTGTGAAGGAAAAGCTGGTCTTCATCACAGAAGAAAAGCTTATCATCATCATCATAGTC ATGGGCCAGGTGAAGATACACAAAAGATGGCACCTTGGAATTTTTTATTGATTTTTTCTTCAGCATTTTCCCATGACAAT GATCAGAATTCTGATTGAAACTAGGAAACTGATCGTTAAGAGGGAAATCAGGAGGGAGAAACCAAGAAACATCTGGGAAG GGCTCACAGAAGAGATCAACCATATCAACTCCAGGATCAACCAACAGAACACGGTTTGTGAGGACAGCATAGAGAAATGC AGAGGCTAAGGTCAAAATCCTATTCCCTAAACCACTATATGAAATCCAAACTACATATTTACATGGTGGGGACTCAGTTA AATGACCAGACCTTAGATCTTTCACTGTTTTGTTATAGGATTCAGTGTAAGGTCCACATTGTTTGTGGAGAGCTTCATAT CTTCTTAATCTAGAAATGAGGTATGAAGAAGGATTTGCTGATAGCCCTTTGTGATTTTGATACCTGCTGAGACAAGATCT TTCATCAAATCCAGATGCAGCTAGAAGGCCACCAAGTAATTTATCTTGCGGCAACTGAAAGGAATCAAAGGCATCACTGT TCAAACCTACAAGCCACACAGAAGATAAAATTCCACCATTATTATAAGACCATGAGTGGCCAGGAAGCAAAGCAAAAGTC AAGAACGAAAAATTTGGAGACAGGAAATTCAGTTGATCCATTCATTAACAAAAAGAAAGAAAGGTAAAACATGAAACACA AGTTGATCAAATGCTCCCTAGCAAGAGAATCAAATGCAGAAATTGGAAAATTCATATGCCGAAAATAGCCATTCTTCTGT ACTCTCAGTTTTAGCTATTGTTGCGTTCTGTTAAAGTCATAGAAGTAACTAACTTAAGCTCTCACTGCTACTCCCACCAA TTGCAGTTAGAAAATCAAGGTTTTAGAGTTCTGGTCAATCCTATGAGGTCACATCAACTGCAAATATTAGTAATTTTTCT AACAGCATTAAGAATCGCAACTTAACCACAACCTCAGCTGTTGATAAAATAAGCGAGCAGACAATGGAAACTTACGATTA AGAATTTAGGAGGCATAACTCAACCACGAAAGCTAGCTAGCTCAAGAGTTGAGGATTGTCTTCCTATATATAAGGGTTGG GTTATCTTGGCCAATGGCCATATCTCCAATTAGTCAATGTAAGACTTCTCCTCACTCCCAGGACATCTGGAGCGTGGGAT ATGCAGGTGCCCCGTATACGGTGATCTACACTTTAGCAAATCTTGGAAAGATTCTAATACCATATTAAAAATTTGGGAGG CCTAACTCAACCACAAAAGTTAGTTAAAGAGTTGAGATTGTCTTCTCATATATAAGGGTTATCTTAGTCATATCTCGACT TCTTAATAGTTACTTGTAACTAAAAATCAACATCCTATTTCAGTAACTACAAACTTAGCAATGTCATGATCATTACATTA GAAATAAATAGTAAAAGAAAGAAAAAAGGGGGAAAACGAACCTTGTTTGAGTCGAAGGAGAGATGTTGTTGGAGTTGGAG GGTGTGGAAGAGCGAGAAGGAAGGAGAGGGAGAAGAGGAAGAGGGAAATGAGAAAGAGAGAGGCGAGGCAGCGCGTGGAA GTGGAGAAGGAGAAGGAGGAGCATTTCCATTTCCTGTTGTTGCGATTCATGAGGGGAAGCCTCCTCATCATCTCTCCCTC CGCAGTGAGATGGATCGGATTGGATCAATCTCTGTTTTATTTCCTCTGCTCCGCCCAACCACATCGCTGTCGTGCATCTC ACGTTGAAATTATGAGTTTTTGACTTTTT 

CDS sequence (LotjaGi1g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGGGAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTC TAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTACTTGCACCTATGTTAAAGCAAGGCATATCTTATGTG AGAAACAAGGTAAGATTAACGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAGCAATGGAGATAAAGTCCCCCCAGCA GAGTTTGCAAAGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAAAGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGG AAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACGCATG GCTACCATATCATCTTATCTGAAGGAAGAAAGAACTGA 

Protein sequence (LotjaGi1g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKDKTKEAGGKGKGKQAASGSDENASKGKGKGAKGGDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPA EFAKIAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 39 39 -
PANTHER 1 145 145 1.5E-78
PANTHER 1 145 145 1.5E-78
Gene3D 40 144 105 1.2E-29
ProSiteProfiles 43 142 100 24.099
SUPERFAMILY 44 144 101 2.42E-24
Pfam 46 138 93 4.8E-19

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0195000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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