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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0195000 |
| Transcript ID | LotjaGi1g1v0195000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26550.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4; TrEMBL-Plants: tr|A7DX10|A7DX10_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0195000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38666516..38672224) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCCACTTCCAGGGACCGTGAGAGACATTTTAGAAGTTTAGGGACGAAGTTGAAGGCGGTGGACACTTTCAGGGACG AACTTGGCTATTTACCCCATGAAATTTCAAGTCATAAAAGATGTCCACGTTAGTAGATTAGTGAGCACATTATCACTTAA TTGATGAGAAGGATGACATGTGCATTTTCAAAAAATTGAGGATATGATGATTAATTTATTATTTTGTAGGGACCAAAAAA ATATTTATCTCGTGCAATGTTTTCAACTTGGGCCTGCGTTCTTATTGTTAACCTACTGCACAATGGATCTACTGCACAAG CAACAACGCGTAGATACGACGACGACAGAAGCAAAATGAAACGCTAACCTCGGTTCTGTACTGGTGATTCCGCTTTACGA ATTTCTCAGCCTGTGACTTTCCTCTTGATTCTGTGCTTTGAGGTAAAGAAGCTCATATCTTTAATCTCTACTATGTTCTT AGAGAAGAGTAGAGTCCCTTTGTGCATAAGGCTCTGTTTATGAGTTGGATTTTGGATGCTAGGGAAGGGAAGGGAAATCA GAGACTTATGACAAGCTTTCCCCTTGTTTGATTTGTTTTTTAAGAGAAGAGTTTAGGAAATTTCTGAAAACCCTCTAATA GCTTTCTTTGATTATTTTGTTGAGTTCTCCTGAATTGGGTGCTTTTGGGTAAGGTTTCGGAAAACCCTCTAATAGCTAGG GAAGGTTTCGTTTTTCTATGAGCTAATACTCTTTGTTTTATTTCTTCTTTTTTGGTTTCCATTGGTGGTTTTCTTATTCC TTTGTGTACGTCTCTTCGTTCTTTTAATTTGTTTTGTCCAAAAAATTGAAATAGTTGAATTTCTACACTTACTTTTTACT GTGCTTTGGTTGTTTGTATCTTCCTTCTTCTAATTTGTTTACAGTGAGTTTCTATTTGCCATGACTTTGGTTGTCTGTCA TTCTTGTGTTGCTTTATAGTTAGGCTTTATTTGCCATGTATTTTACTGGTTCGTTTTGGAAGTTACAATTGGTTGCTTCA CTTAATCAGTGGTAATCATCAAGAGTTTTGAGAACAATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGG GAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTCTAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTA CTTGCACCTATGTTAAAGGTAGAAATTTTTCATCATTTATTGGTACCTTAGAACTTATGTTCAGTTTCTTTCATTTTTGG TTGTTCAGAATGACATTGATTTATGGCTTCTTATTTTGCACAGCAAGGCATATCTTATGTGAGAAACAAGGTAAGATTAA CGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAGCAATGGAGATAAAGTCCCCCCAGCAGAGTTTGCAAAGGTATTTT TTGTTCCTGCTGGAGGTTATACATTGATTTTTGTTCTTGTTTCTTTTCCAAATCTTCATTCCGCCCCTCCCGCAACTGCC TTTTGTGAGTAATGTGATATTTGATTAGAGAAAAAACACTCTTTTGAACACAATTGGCTTGTTTTTAAAAAAGTCGACAC ATTTTTCTAAATGAGAGGCTAAAAAAGTGTGGAAGTATGCATTCAAAAGACTGTATTGTTAGCACTCCAAAACAAGATAC TTGGTCATTTAAAACTAATATAGAAATAGAAATATTGTCACTTCAATGGTTTATCATCCATAATATTTCATTGATCTCAC AGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAAAGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGGAAAGATGGCT GGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACGTAGTTCTCTTTCTT GTGTACACTAATTGTTATTATCTTGCCGAATCCCAATTCCTTATCCTCACATTATCACCTGCTAACCTTTGCTTGGATGA TGATGCAGGCATGGCTACCATATCATCTTATCTGAAGGAAGAAAGAACTGATCCCTGAATAAAAAGAAATTGAGTCTCAA CGGCACTAAAGCACTTTAGTTATCTGGTTAAATGATCGGATGTTGGTTCCTTTCTTTTTTGTGATTCTGGTTGATAATGT AAAACCAACAGTTTGCCATATGTATGTTGATCTTGCTTTCCAGTACTTTGACGATTGAGAGCATATATGTAAATGTGGAT GGTTTCACTATATTTGCGAAGTTTATTACTGTTTTAGTTCCATTCAATTATAGTTTTCAGTTAAAACTTGTGCTTCCAGT TAGTTTAATTAAGATGGACCGAGCAGAAAGGGTGTCCATTCATGTTTAGCACAATGAATGGAGAATGATGTCAACCATCA TTTCAAAATGGAAAGCATTACTTGTACAATTTATACAATTATGAGAAAGAAATGAAGAGGATAAAGAAAAGATTAGATGG TAATGATAGTTAGAGAGACTATTTTGTAAAAAGTGATCATATAATTTATGTATGAGGTTATGTTTGGATACAGGTTAGCA TTAAGGTAAACAAATTTTAACATTTTGAATGGAAAATGATGGCAACCATCATTTCAAAATGGAAAACATTAGATGGTTAT GATAGTTAGAGAGACTGTTTTGTAAAAAGTGATCATGAGGTTATGTTTGGATACCGGTTAGCATTAAGGTAAACAAATTT TAACATTTTGAACTAAAGAGTAAACGTGTATTGAGATGAAAGTCCGTTGACATTGTTGTCCTGTTATCCAAACATACACC AAGTAATGTACTGTTTTTCAAAGCAATTCAATCTGAAAGAAAGATATTCTGATAACAGTAAGGTGCTAGTATATTATGAA CCCAATAACTGTGAAACAATGATGGCACTTAAAAAGTTCTATTTTATGGTTGCTATAGGGAAAGAAAAAAAAAATCAACA ACTAATTCTATCATACAACAAAATTGGCAGTACTTCTAACAGAGTTTCGACAGTCATGGCATTCATGACTATAATAATGA CTAGTTAACCATGATTATCTACGAGCTTTAGACCCCAGCTCATATCCTCACAATGCCTTACATGCGGAACGAGCGCACCG GTGTCAGTTCCTCTTTTAGCCTTGCAATCATAGAAGGGAGGAGCATGGAAGCATGGTTCCATCGACATGGCGCGTTGACA AGGAGGGTCAGGGGCTGTTCCATTCTCAGGCTTGTAGAGTATCCATGGTTTTAAACCTCCAAGCCCCTGCGCGACGTAAC CGAAAGTAGACCATGAGCTAGTGACTAACATGTCAGTTAAGCTCAAGAGATACATTTCTGCCCAAGCTTTTTGGTTGTGC ATCTGCTTCTCTGTTTGCTGATATTCCTCATGGCTTGGCTGGTAAATGCCCACAACTTCTCCTGTCACAGTGGGATATTC CCAGTACATGTCTCTCACCATTTCAGAATAACCCGAGCTTAAGGATGTCATCAGCACCGCTTTTGACTTCGGCTTCCCTG ATGAACTGATAATATTCTGACCCCTGCTAACATCAGGCAAAATATTCTCCTTCAAAGCACAAGCTATGATCTGATCCAGT ATATGTTGAAATGGGCCACTTCCAGTGTCAAACACTCTGATCTGGATGCCTACTCTTTCATCAGCACTAGCTAAATAAGG TTGGTAGTATCTGAGAACAAGTCCCCATACTGTGTTGGTGGGGTGGAATAGATATCTGCCTAAGAAATGGAAAACTGTTT CCTTGTTTGGAAATAAGTCACTCAGTTCCTGCTGGAAAGATGGCATCAAGAACAGAGATGGGACAAAGTAATTATCAGTT CTCACCACTAGCCAAGGAACTTTGTGAAGGAAAAGCTGGTCTTCATCACAGAAGAAAAGCTTATCATCATCATCATAGTC ATGGGCCAGGTGAAGATACACAAAAGATGGCACCTTGGAATTTTTTATTGATTTTTTCTTCAGCATTTTCCCATGACAAT GATCAGAATTCTGATTGAAACTAGGAAACTGATCGTTAAGAGGGAAATCAGGAGGGAGAAACCAAGAAACATCTGGGAAG GGCTCACAGAAGAGATCAACCATATCAACTCCAGGATCAACCAACAGAACACGGTTTGTGAGGACAGCATAGAGAAATGC AGAGGCTAAGGTCAAAATCCTATTCCCTAAACCACTATATGAAATCCAAACTACATATTTACATGGTGGGGACTCAGTTA AATGACCAGACCTTAGATCTTTCACTGTTTTGTTATAGGATTCAGTGTAAGGTCCACATTGTTTGTGGAGAGCTTCATAT CTTCTTAATCTAGAAATGAGGTATGAAGAAGGATTTGCTGATAGCCCTTTGTGATTTTGATACCTGCTGAGACAAGATCT TTCATCAAATCCAGATGCAGCTAGAAGGCCACCAAGTAATTTATCTTGCGGCAACTGAAAGGAATCAAAGGCATCACTGT TCAAACCTACAAGCCACACAGAAGATAAAATTCCACCATTATTATAAGACCATGAGTGGCCAGGAAGCAAAGCAAAAGTC AAGAACGAAAAATTTGGAGACAGGAAATTCAGTTGATCCATTCATTAACAAAAAGAAAGAAAGGTAAAACATGAAACACA AGTTGATCAAATGCTCCCTAGCAAGAGAATCAAATGCAGAAATTGGAAAATTCATATGCCGAAAATAGCCATTCTTCTGT ACTCTCAGTTTTAGCTATTGTTGCGTTCTGTTAAAGTCATAGAAGTAACTAACTTAAGCTCTCACTGCTACTCCCACCAA TTGCAGTTAGAAAATCAAGGTTTTAGAGTTCTGGTCAATCCTATGAGGTCACATCAACTGCAAATATTAGTAATTTTTCT AACAGCATTAAGAATCGCAACTTAACCACAACCTCAGCTGTTGATAAAATAAGCGAGCAGACAATGGAAACTTACGATTA AGAATTTAGGAGGCATAACTCAACCACGAAAGCTAGCTAGCTCAAGAGTTGAGGATTGTCTTCCTATATATAAGGGTTGG GTTATCTTGGCCAATGGCCATATCTCCAATTAGTCAATGTAAGACTTCTCCTCACTCCCAGGACATCTGGAGCGTGGGAT ATGCAGGTGCCCCGTATACGGTGATCTACACTTTAGCAAATCTTGGAAAGATTCTAATACCATATTAAAAATTTGGGAGG CCTAACTCAACCACAAAAGTTAGTTAAAGAGTTGAGATTGTCTTCTCATATATAAGGGTTATCTTAGTCATATCTCGACT TCTTAATAGTTACTTGTAACTAAAAATCAACATCCTATTTCAGTAACTACAAACTTAGCAATGTCATGATCATTACATTA GAAATAAATAGTAAAAGAAAGAAAAAAGGGGGAAAACGAACCTTGTTTGAGTCGAAGGAGAGATGTTGTTGGAGTTGGAG GGTGTGGAAGAGCGAGAAGGAAGGAGAGGGAGAAGAGGAAGAGGGAAATGAGAAAGAGAGAGGCGAGGCAGCGCGTGGAA GTGGAGAAGGAGAAGGAGGAGCATTTCCATTTCCTGTTGTTGCGATTCATGAGGGGAAGCCTCCTCATCATCTCTCCCTC CGCAGTGAGATGGATCGGATTGGATCAATCTCTGTTTTATTTCCTCTGCTCCGCCCAACCACATCGCTGTCGTGCATCTC ACGTTGAAATTATGAGTTTTTGACTTTTT
CDS sequence (LotjaGi1g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAAGATAAGACAAAGGAGGCAGGAGGGAAAGGCAAGGGGAAACAGGCAGCAAGTGGAAGTGATGAGAATGCTTC TAAAGGCAAAGGAAAAGGCGCGAAAGGTGGAGATGGGCTTGGTACTTGCACCTATGTTAAAGCAAGGCATATCTTATGTG AGAAACAAGGTAAGATTAACGAAGCCTACAAGAAGCTGCAGGATGGTTGGCTTAGCAATGGAGATAAAGTCCCCCCAGCA GAGTTTGCAAAGATAGCCCAAGAGTATTCTGAGTGTCCATCAGGAAAGAAGGGTGGAGATCTTGGATGGTTTCCCAGGGG AAAGATGGCTGGGCCATTTCAGGATGTTGCCTTCAACACAGTTGTTGGAGCTACTAGTGCTCCTTTCAAATCAACGCATG GCTACCATATCATCTTATCTGAAGGAAGAAAGAACTGA
Protein sequence (LotjaGi1g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKDKTKEAGGKGKGKQAASGSDENASKGKGKGAKGGDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPA EFAKIAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 1 | 145 | 145 | 1.5E-78 | – | |
| PANTHER | 1 | 145 | 145 | 1.5E-78 | ||
| Gene3D | 40 | 144 | 105 | 1.2E-29 | – | |
| ProSiteProfiles | 43 | 142 | 100 | 24.099 | ||
| SUPERFAMILY | 44 | 144 | 101 | 2.42E-24 | – | |
| Pfam | 46 | 138 | 93 | 4.8E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi1g1v0195000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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