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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000623
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.355s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0093719.1
n.a. PREDICTED: shikimate kinase, chloroplastic-like [Glycine max] gi|356525535|ref|XP_003531380.1| chr0 39340432 39344849 -
3 domain predictions
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Lj1g3v0579760.1
n.a. PREDICTED: shikimate kinase, chloroplastic [Glycine max] gi|356498875|ref|XP_003518273.1| chr1 7259168 7261536 -
2 domain predictions
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Lj1g3v0579760.2
n.a. PREDICTED: shikimate kinase, chloroplastic [Glycine max] gi|356498875|ref|XP_003518273.1| chr1 7259168 7261536 -
2 domain predictions
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Lj1g3v1218980.2
n.a. PREDICTED: shikimate kinase, chloroplastic-like [Glycine max] gi|356525535|ref|XP_003531380.1| chr1 14811537 14815097 -
3 domain predictions
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LotjaGi1g1v0208500.1
n.a. Shikimate kinase; TAIR: AT3G26900.1 shikimate kinase like 1; Swiss-Prot: sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic; TrEMBL-Plants: tr|I3STA6|I3STA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0208500 LjG1.1_chr1 45751842 45756109 +
3 domain predictions
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LotjaGi1g1v0311800.1
n.a. Shikimate kinase; TAIR: AT2G21940.4 shikimate kinase 1; Swiss-Prot: sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic; TrEMBL-Plants: tr|I3SYZ9|I3SYZ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0311800 LjG1.1_chr1 75602286 75609261 -
3 domain predictions
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LotjaGi1g1v0311800.2
n.a. Shikimate kinase; TAIR: AT2G21940.4 shikimate kinase 1; Swiss-Prot: sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic; TrEMBL-Plants: tr|I3SYZ9|I3SYZ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0311800 LjG1.1_chr1 75605531 75609199 -
3 domain predictions
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LotjaGi4g1v0403000.1
n.a. Shikimate kinase; TAIR: AT2G21940.4 shikimate kinase 1; Swiss-Prot: sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic; TrEMBL-Plants: tr|I3SSP1|I3SSP1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0403000 LjG1.1_chr4 77997539 78005467 -
3 domain predictions
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