Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v0579760.1

Overview

Field Value
Gene ID Lj1g3v0579760
Transcript ID Lj1g3v0579760.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: shikimate kinase, chloroplastic [Glycine max] gi|356498875|ref|XP_003518273.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21087
65 279 215 5.70E-123 –
PANTHER
PTHR21087:SF4
65 279 215 5.70E-123 –
Hamap
MF_00109
88 263 176 15.857
IPR000623
Gene3D
G3DSA:3.40.50.300
89 236 148 7.20E-25
IPR027417
SUPERFAMILY
SSF52540
90 208 119 1.67E-11
IPR027417
PRINTS
PR01100
91 106 16 8.80E-12 –
Pfam
PF01202
98 239 142 4.10E-25
IPR031322
PRINTS
PR01100
115 128 14 8.80E-12 –
PRINTS
PR01100
144 152 9 8.80E-12 –
PRINTS
PR01100
162 171 10 8.80E-12 –
PRINTS
PR01100
182 199 18 8.80E-12 –
Coils
Coil
255 275 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj1g3v0579760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0579760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.