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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0311800 |
| Transcript ID | LotjaGi1g1v0311800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Shikimate kinase; TAIR: AT2G21940.4 shikimate kinase 1; Swiss-Prot: sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic; TrEMBL-Plants: tr|I3SYZ9|I3SYZ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0311800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75605531..75609199) extracted from Lotus japonicus Gifu genome v1.2.
GCATGCTATGTGATGTGTCACTTGCCACAATCATTTTGCCAACCAAACTGGCGACATACGACTCAGTGGGAGTAGCACTC AGCAGTCAGCACCACTCACAATTTTCCTTTTACAATTACTGAATGAAAAGTTCATAATAATTGAGATTTTAACAATTCTG TAATGTGTTCTAAGAGGTGAAAAGGTTTCAGAATCTCTCTCTGCTTACATTTTACTATTTTTTTCAGCATTCATAGGATC CTATTCAAATCAAACTCATATATCAATGTGACATCGATTTTCGAATATTTCATATTTGTTTATGCTCCGTTCTGGATTAA CTCACTCCATTCCAGCTACTAATTTTGTCGTCTTGTTCCATTTGCATTTATTTATTCACTGATTCTGTCATATCCATTAT CTTAACGGGTCAAAATCACGCTGAAACCGCATTTTATCATTGATTTAACTTACTGTCGTTGAATTCGGCAGTTTCGAACT GAAGAAACCATGGAAGCTAAAGCGGTTCACAGCTTTCACTTGTCGACCATGGTGGTCGGAGACAAGCTCGGAAGAACAGG ACCAAGCAGTTCTCTGAGAATGTCTAGTGGTTTTGTGAAGCCGAAGAAGTTTCAGGGTTTTGTTTCGCATAGGTTGTCAT TATTGCAAAGGAGTCAGCAAAGAACGGTTCCTGTTGTGGTTGCATGTTCCTCGTACAACAATATTCCAGGTTGCCATTTA AAGTATAACAACTTCTGACAATTTGCATCTATGAATTCTCGTACTTGTAATTTTTTCACAAATTTTTGAATAAATTATAG AGGAATTTCAAAACATGCAATCCACTTTGAGTGATGATGGATTATATTCTTGTTCTTCTCCATGTCAATTTTGAAGGGGT GATTTTTTTTTACCCAAAGGAATACCAGTTTTGATTAGTGAGCTTATAGTGTAAATCCTCAATTTGGTTCCTAATTTTTT TCCTTCACAAAATCACATCCATAATTCATAACTTCAAAAAGCTACATATTTAGATGATATTAGGCACATTAGTTGCTAAT ATGTGGTTTGTCAGTCTCATCAAGACTCAAGTGCTATTGGCCTATTAGGTAATGAGATTTGCTTATATTAAGGATCAATT TGATGGATGTAGAAAATTGAGGGTTTACTCTTATAGCTAATAATGGGAAGAAGGAGAAAGGAACAATTTTTGTATAAATT ATCGGTGGATAGGAAATTCGTAACTGTATGGAAATTGCAGTTCTGCCCTCGAAGCATTAGTTTCTGTTTTTTCTTTCTTT TTAGAGGTTTAATTTTATGCTCCTCCCATTGAATAAACAAAGGCTTCCCTAACATATTCTTTTTGTTTCAAATGTCACTC TTGTAGCTTCTATATTGGAAACTGGGAGCTTTCGTGGTCCTCTTGATGAAGAAATGATTTTGAAGGTAAAGCATGATGCG AATTGTCATTTTTAATTAATTTAAGCCCTTTCGTTGTAGTGCTTCTATTATGTAATTCATCAAGAAATGGTAATTTGAAC TTAGTTTTGCTTGTGTGAGCATCTATGTGCCATTGTCTTATGTGAATTAATTAAATTGCAGAGTAAATCACAAGAGATCG AGCCATATTTAAATGGACGTTGTATATATCTTGTTGGTCAGTTTCTTGGTAGAAGGATTTGTGCTTACCAGGTATACATT GCCAATGTAATTACTTTGGTATTCAGCATTTTGAACTTTACATGCAGGAATGATGGGATCTGGGAAGACAACTGTGGGGA AGATTTTATCAGAAGTGCTTTCTTATTCCTTTTTCGACAGGTTAGTATGATATTCAACTGATATAGTGCATGCTTGGTTT AGTGTTGGGAGAATTTTATTTTTTAGGCACATCAAAATTTTCTGCTAAATATATATTTTCTGCATTTATCAATATTATGT TCTTACATTTATGGGAGCAGTGATGCATTGATCGAGGAGGAGGTTGATAAAACTTCTGTAGCTGATATATTCAAGAACTA TGGGGAGGCTTTTTTCCGTAATAAGGAGGTCAGATAAAATGCACAACGTTTCCGATTTGTGTGTTGCTATTCTTTTTCTT TCTTGGTTCTATGATCACATTTCTGTTCATTTTCCATGCTTATTTTACGGTTGCAGACAGAGATACTGAAGAAGCTGTCA ATGATGCGAAGATATGTTATTTCAACTGGTGGAGGTGCTGTTGTGAAGCCCATCAATTGGTATAATAAAGGACTTACTTA TAGTGAGAAAAGTTTTACCTTCACTTTTATGATTAACTCTTCTCAGTTCATAGCATGTTTGTATCAATTTATTTCTCCTC ATAATTAATGTTGGCACCCAAAAACTAATCACTGAAGCTTCTCCTCAGAATTGATTCAGGCTATAGAATCAATTCGAGAA GGATTTACAAAGTGTTGACACATACTTGAATATTGCCAGGAAATATATGCATAAGGGGATTAGTGTTTGGTTGGATGTAC CTGTAGAAGCCTTGGCTCGGAGAATAACAAAAGTAGGAACTAATTCTCGCCCTCTTCTACATTATGAAGCTGGAGATGCA TATACAAAGGTAAGATTTTTTCCTTCTTAAAAGTGTTTTTCTTTTGCAAAATGCAAGAGGGTAATTATGAAGTCACAAAC TGAGCTGGGATGGGAATCTGCATCAAAATTATTTCAACTGCTAAATAATTTTATCCTTTGTAATTTTTACCTGCAGACTT TCATGCGTTTGTCTTCTCTTTTTGAAGAAAGAAGCGAAGCATATGCCAATGCCAATGCCAGGGTCTCCTTGGAAAGTATG CCTGCAAATGTTGTTTCATCGTTTTTAATAAGAGTAGTGTTTATGTCCAGAATCTGTGGGAATAGAACAGGAAAGGGATT GGTATTTATTAATAGGCTCCTGTGACTTATGCGGTTTTTTGTCTTACTGTTCTACATAGTTTTAATCTTCAAAGATTGTC GAATGAAGCAAGATATTCGGATTATTTATGTTATAGATTTTGTTTTCTTTTTGGTCAAGTATGTTAAATATTTCTGTGAA GTTTAAAAGTGTACTATTCTTTCATCCTATACACGCCGATGATTAATTGTGTTCTGTTTTTTGTGCAGATATAGCAGCAA AACTGGACCAAAAAGATGCGTCGCATTTATCTCCAAAGACTATTGCAATCGAGGTTTTTCACTTTCTGCTCATTGCATTT TACTTTGCTTTTGCCCTGAGTGTTCCTGTAAGCTCAAATTAGATCTACATTTGTATGATATATACTGACAAATTTGTGCC AACGTATTTCTCAGGCACTAGAACAAATCAATGGGTTTCTAAAGGGTGAAGATGGCTGTTAAGTATGATGCAAGCACAAA CAAAGACACAACCATGTAGTGTTTATATTATTTTCAAATTGCAATAAGCATGGGAATGTGATGTATCTTTTTTGTTCCCA GAAAAATAAGATGTAATAATCTACGTGGTCTATCGTTAGCTTTTATGCAATTTGTGTCAGCAATAATTTGGCATGAAATA GCAAATATTAATGTTTTTTTGTTCAGTGTATTATACAGGCAGATCAGGATGTTTGCTGTAATTGGATTTAGATATGTATG CCTTTAAAGAGGTCTGTTTTGGTGGATAGTGACCCTTACTTTCTATATATTTTTTTTTATCTTACATAT
CDS sequence (LotjaGi1g1v0311800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTAAAGCGGTTCACAGCTTTCACTTGTCGACCATGGTGGTCGGAGACAAGCTCGGAAGAACAGGACCAAGCAG TTCTCTGAGAATGTCTAGTGGTTTTGTGAAGCCGAAGAAGTTTCAGGGTTTTGTTTCGCATAGGTTGTCATTATTGCAAA GGAGTCAGCAAAGAACGGTTCCTGTTGTGGTTGCATGTTCCTCGTACAACAATATTCCAGCTTCTATATTGGAAACTGGG AGCTTTCGTGGTCCTCTTGATGAAGAAATGATTTTGAAGAGTAAATCACAAGAGATCGAGCCATATTTAAATGGACGTTG TATATATCTTGTTGGAATGATGGGATCTGGGAAGACAACTGTGGGGAAGATTTTATCAGAAGTGCTTTCTTATTCCTTTT TCGACAGTGATGCATTGATCGAGGAGGAGGTTGATAAAACTTCTGTAGCTGATATATTCAAGAACTATGGGGAGGCTTTT TTCCGTAATAAGGAGACAGAGATACTGAAGAAGCTGTCAATGATGCGAAGATATGTTATTTCAACTGGTGGAGGTGCTGT TGTGAAGCCCATCAATTGGAAATATATGCATAAGGGGATTAGTGTTTGGTTGGATGTACCTGTAGAAGCCTTGGCTCGGA GAATAACAAAAGTAGGAACTAATTCTCGCCCTCTTCTACATTATGAAGCTGGAGATGCATATACAAAGACTTTCATGCGT TTGTCTTCTCTTTTTGAAGAAAGAAGCGAAGCATATGCCAATGCCAATGCCAGGGTCTCCTTGGAAAATATAGCAGCAAA ACTGGACCAAAAAGATGCGTCGCATTTATCTCCAAAGACTATTGCAATCGAGGCACTAGAACAAATCAATGGGTTTCTAA AGGGTGAAGATGGCTGTTAA
Protein sequence (LotjaGi1g1v0311800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAKAVHSFHLSTMVVGDKLGRTGPSSSLRMSSGFVKPKKFQGFVSHRLSLLQRSQQRTVPVVVACSSYNNIPASILETG SFRGPLDEEMILKSKSQEIEPYLNGRCIYLVGMMGSGKTTVGKILSEVLSYSFFDSDALIEEEVDKTSVADIFKNYGEAF FRNKETEILKKLSMMRRYVISTGGGAVVKPINWKYMHKGISVWLDVPVEALARRITKVGTNSRPLLHYEAGDAYTKTFMR LSSLFEERSEAYANANARVSLENIAAKLDQKDASHLSPKTIAIEALEQINGFLKGEDGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 295 | 265 | 1.3E-106 | – | |
| PANTHER | 31 | 295 | 265 | 1.3E-106 | – | |
| Gene3D | 89 | 299 | 211 | 1.3E-71 | – | |
| Hamap | 105 | 290 | 186 | 25.027 | ||
| SUPERFAMILY | 106 | 267 | 162 | 2.73E-22 | ||
| CDD | 108 | 268 | 161 | 1.69374E-54 | ||
| PRINTS | 108 | 123 | 16 | 6.3E-26 | – | |
| Pfam | 114 | 279 | 166 | 7.0E-45 | ||
| PRINTS | 132 | 145 | 14 | 6.3E-26 | – | |
| PRINTS | 161 | 169 | 9 | 6.3E-26 | – | |
| ProSitePatterns | 162 | 187 | 26 | - | ||
| PRINTS | 179 | 188 | 10 | 6.3E-26 | – | |
| PRINTS | 199 | 216 | 18 | 6.3E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0311800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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