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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0208500 |
| Transcript ID | LotjaGi1g1v0208500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Shikimate kinase; TAIR: AT3G26900.1 shikimate kinase like 1; Swiss-Prot: sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic; TrEMBL-Plants: tr|I3STA6|I3STA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0208500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45751842..45756109) extracted from Lotus japonicus Gifu genome v1.2.
TATAGAATAGTTGAAAGTGTGCAGAAGAGTAGAAGAAAGAGATAATCTGACTTGAAGTGTGAGAGTGAATAGAGGTTTCC CAATCCCATGGAGAGGGCAAGCACAAGGTTGAACAATACATCCTCCACTCCTCTTCTACCATTTCTCTCTCCCAGTTGCC CCCTTCAATTTCAGCTCCACACTTCCACCCTCACCTTCCCTACCCTGCACGCTCGTCCAAACCCCCTTCAATTTCGCCGG CCACCACCCATTACCAATTGCTCAATTCCCTGTAAGCCTTTCGAATTTATAGTTTGTTTCTATTTATCTCTTGTTTCTTA ATTGAATTTTCAAGCTTAAAATGCATCCAAATTGGATTGAATAATAACAAATGGTGCTGTCAAAATTTAATCTTTGGCAG TTAATGTTCTTACTCTGTAATTTTTGTTGTTTTTTCTTCCTGCCCCATATAGCTTCAGTGTCTAATGTTGGTGCCACGGA TTTATCTCTTGCGGTGAAGGTGACATCCAATTCCCTTGTTGAATTCATATGAATGAATACATTGGGTTACTAATGCTTGT AAATAATTGACTTTCTTGAATGTTTCACATGATATCAATGAGATTGAAAAGTGATTTTTCTAATAGCTGAAACCAGAAAC TGCTTATTCTAACTCTTAAGTTTTGACTCAGAAGAAAGCAGCAGATGTGTCCCCTGAGCTGAGAGGGACCTCCATATTTC TGGTTGGTAAGAATAGCTTGTAATGCAATTAATGGCTTTAGATGTTTGTGGCTTATCGTGAGTCAACCGCTTATTTATTT GATGAAGGTATGAAAGGCTCTCTTAAAACCAGTTTGGGAAAGCTGCTGGCTGAAGCTTTGCGGTATTATTATTTTGACAG GTATCTGTTTATTCTCAGATAAAAGGTTCGAAGAGAAAAAAGTAGCTTTTAATTTTTAGCTAAACTTGATGTTTATGTAC TCTATTCAGCGATAGCTTGGTGGAAGAAGCTTTAGGCGGTGTATCAGCCGCAAATTCTGTTAGACAGAGTGATGAAAAGG GCTTCTCCGAGTCTGAGGTGATCGTTTTAGACTTGCTTCATGCTTCTCTGTGTTTCATTGGATGCATATTTGTACATTGT CTGTGTATCAGAACAATGTGAGAATAACAAGCTAATTTCTTTTAGTTTTCTCAGCTGGAATGCTCTTTCCACATAAATTT CCAGGACAAAGTTGCTTCATATCCACCACTTTTTTATGAATTAGAATATGAAGTACTTATGTTTTACATGTCAAATGCTG CAGACTGAAGTACTGAAGCAATTGTCCTCCATGGGCCGACTAGTAGTTTGTGCTGGAAATGGTGCTGTTCAAAGTAAAAC TAATTTGTATGGATTTATAATTGCATGCTTTTGCAGCTCACTTTTCTTATATTTTATTAAATAATATGCCAAACTCCATG TTAACGTTAATATTGTTTTGACTTTCTCTTAAATTCACTTAGGGCACTTCTGAGACATGGGATTTCATTGTGGATAGATG TGCCTCTAGACATTGTGGCTAGGGATGTAATTGAAGATCAGAGTCAATTTGCTGCATTTGAGGTATCTTTTTCAGGATCT TACATATAGGTTGATTACTGACTATTAAAAATTTATCGATATGTTTCCAAGACTTCTACTTGCAGCAAATCTAAATCCCT AATTGTTAATGTCTCTGATCAATGATATTAGGAGGTGAATGAACTAGGTGCTCTATACAATAAATACAAAGATGGATATG CTACAGCTGATGCAATTATTTCACTTCAAAGTATATTTCACCTTTCCTGGCTGTTTTATTTACTTTTTTCACCAGTAAGG GGAACCGGGGGTGGGGTGGGTTTACCACCTTTGCCTCTAGTCCTAACAGCTTGATTCTTTTTACAGAGGTTGCTTCTCGG CTGGGTTATGATAACTTAGATGACATTACAAAGGAAGATATGGCTTTGGAGGTTATAATTTTTAGTCAAGCAATTTGTAG CTTTAATTTGAATCATGTATACTAATTTTTTATATTAGCAAAGTGCCAGATAAGCATAATTGTTTTGCAAAAACTGAGTT AGTAGCATTTTTATTGACTCTTGGATGGAGGAGTAGTTCCTACCATGTTGACTTGTCCAACTATTATCATCTGGACAAAT TTTAACTGAATTCTGTCATTTTCTTTTGGCTTCTTATTACTATTGTTCTAATAACTTTGAACAAATTTCAGGCTCTTAGG GAGATTGAAAAGTTGACCAGAGTAAAGAAGATGATGGAAGAGGCTGCAAGACCATTTTAAGCAACCATGGCATGCTCTGT TATTTTTGTATTAACTAGTTTGTTTCCTTTTTTACTTATTTATTCCGCTGAACGTACTAGACTGTTATTTCTGAAAAAAA AAAAAAAAAACTCTTGTGTGTATCTCTAGTCAGGGGCGGAGCTAGGCTCCGGCAAGGCTGGGCACATGCCCAGGCTTCTT GCCAAAAAAAAAATTTTTTACTTGGGCCATAGGCCCTTTTTTTAAAAAAAAAGAATTTCAGATGGGCAAAAACAAATTTG ATTGACACTGCCCTTGGCCCTTGCACACAACAGTTTTCCTCTCTTCTCTTAGTCTCACGCTCACGCACATGGAAAACCTT CTCTGAAATTTTGAAACGGCTTGAATCTTCCCTTGTGCCTACTTCTTCTTCGTCGCTTGTTCCTGATTTGTGCCTTGCAG TTGTGCCTGTTTGTGCCTGCTTCTTCCTCTCTCTCTATCTTGTTCAGTTGTTCTATTAGGTATGTTGATTTTTCTTCTTC CCCTGTCTTTGGATTTGTCTCCTCTATTGATTCTGCTTCTTCCCCTCTCTCTGGATTTGTCTCTTCCTAGTTCTATTTCA CTTGCTTTATATGATAAGGAAGTTTTCAGCATTTATTCTTAATTGGGTATTGTCATTCATTTACTGTGTTTCATTGGTGA TTCTGATTTTTGTGTTTTTGTTGTTGTTCTATCCAATTTCAATATACTATGTGCCTATTTCAATAGTGGAAATTGTTAAG CATGTGAATTTTGAGCTAATTTAATTGTCAAAAATGAATTAGCGTTGCTTTACAGATTAATAGTTGCAGAGTGAATCAGC CTTGTATTGCATATTAACTCCTTGTATTTTAACTCCATGTATTTGAATACAACACAAGGGTTGGTCTCCTTGCATAACAA AAGAGAATAACTCCATGTATTTTAACACTAAATATGTTTCAAGCTTTGAGTGAGAGGGGATATGAGCTTGTTTCCGGTGG AACTTATTTGCAATTGTAACATTCAGTGCTAATAATTGTGTTATAGTCACAAACCTTACATTTAATTGTCTATTGGTTGT GTCTTATAGAACAATTTTAGATGTTGCATTATAGATTATATATCTAAATGTATATCACTATGTGCCTCGTTTACCTCTTT TTCTTGTTCTTTTATCCTTAAGCTTTGTTGTTAGTTTGTCTAGTTGTCTCTTGTTTTTCTGTTGAAGACTTATCTTTTGT TGATGACTCTAGTTTCCTTTTCCCTACCCTGTGATGGTTGTTCTCTTGGTTGCTTTTTATCTAATATATTATTCTTTTTT CTAAAAAAAATAATCGAATAAATTATTCGCGGTTCAATTTTTTTTGCCCAGGCTTCAAAATAATCCTGGCTCCGCCACTG TCTCTAGTACTCCATTTTACAGCTTCTCCTACTGTTGTCTATAATGAGACTGGATGATTTACCTCCAACTTTAATATACA TACACTTACTTTCTCTTCCTTCTCATTTTCATTCAGTTTGATTTCCTATCTCTCTTACAATTACACAACACCAAATAATA CATACGATCAAAGAGCGTGTGTCGAAATACATGGATATTCATGGTTGCGGATAATTTTACCCATAATGGGTTTTTATCCA CAAATATTTGCGGGTGTGGATAATTTTAACATCCTAAGAAGTTGTTTGGTAGAAGGTATTAATAACATTTATGGGAAAGT ATATGTGAGAAGGTCGTATTCTTGTATTTGGTAGATGTTTTGTAAAAATATTCCCGGGCATAATTTAGACCATGAGCAAT GGTTCAACAAAAAATGTTTTGTTTACCCCTTTCCTACCTCACTTTTTCTCTTCCCAACACTCCACATCATCTTCTCTCTC CAATTCAACACTCTCTCAACAATTACCCACTCCAATGATTTTACTTAACTCTCAACACCCTACCCCACCACTCACCACTC ACCCTATCCCACCACTTTTTTATTTCAC
CDS sequence (LotjaGi1g1v0208500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGGGCAAGCACAAGGTTGAACAATACATCCTCCACTCCTCTTCTACCATTTCTCTCTCCCAGTTGCCCCCTTCA ATTTCAGCTCCACACTTCCACCCTCACCTTCCCTACCCTGCACGCTCGTCCAAACCCCCTTCAATTTCGCCGGCCACCAC CCATTACCAATTGCTCAATTCCCTCTTCAGTGTCTAATGTTGGTGCCACGGATTTATCTCTTGCGGTGAAGAAGAAAGCA GCAGATGTGTCCCCTGAGCTGAGAGGGACCTCCATATTTCTGGTTGGTATGAAAGGCTCTCTTAAAACCAGTTTGGGAAA GCTGCTGGCTGAAGCTTTGCGGTATTATTATTTTGACAGCGATAGCTTGGTGGAAGAAGCTTTAGGCGGTGTATCAGCCG CAAATTCTGTTAGACAGAGTGATGAAAAGGGCTTCTCCGAGTCTGAGACTGAAGTACTGAAGCAATTGTCCTCCATGGGC CGACTAGTAGTTTGTGCTGGAAATGGTGCTGTTCAAAGTAAAACTAATTTGGCACTTCTGAGACATGGGATTTCATTGTG GATAGATGTGCCTCTAGACATTGTGGCTAGGGATGTAATTGAAGATCAGAGTCAATTTGCTGCATTTGAGGAGGTGAATG AACTAGGTGCTCTATACAATAAATACAAAGATGGATATGCTACAGCTGATGCAATTATTTCACTTCAAAAGGTTGCTTCT CGGCTGGGTTATGATAACTTAGATGACATTACAAAGGAAGATATGGCTTTGGAGGCTCTTAGGGAGATTGAAAAGTTGAC CAGAGTAAAGAAGATGATGGAAGAGGCTGCAAGACCATTTTAA
Protein sequence (LotjaGi1g1v0208500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERASTRLNNTSSTPLLPFLSPSCPLQFQLHTSTLTFPTLHARPNPLQFRRPPPITNCSIPSSVSNVGATDLSLAVKKKA ADVSPELRGTSIFLVGMKGSLKTSLGKLLAEALRYYYFDSDSLVEEALGGVSAANSVRQSDEKGFSESETEVLKQLSSMG RLVVCAGNGAVQSKTNLALLRHGISLWIDVPLDIVARDVIEDQSQFAAFEEVNELGALYNKYKDGYATADAIISLQKVAS RLGYDNLDDITKEDMALEALREIEKLTRVKKMMEEAARPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 279 | 271 | 8.2E-115 | – | |
| PANTHER | 9 | 279 | 271 | 8.2E-115 | – | |
| Gene3D | 74 | 278 | 205 | 4.1E-53 | – | |
| Hamap | 89 | 264 | 176 | 16.101 | ||
| SUPERFAMILY | 91 | 212 | 122 | 5.54E-12 | ||
| CDD | 91 | 234 | 144 | 3.56265E-33 | ||
| PRINTS | 92 | 107 | 16 | 1.7E-12 | – | |
| Pfam | 99 | 240 | 142 | 7.6E-26 | ||
| PRINTS | 116 | 129 | 14 | 1.7E-12 | – | |
| PRINTS | 145 | 153 | 9 | 1.7E-12 | – | |
| PRINTS | 163 | 172 | 10 | 1.7E-12 | – | |
| PRINTS | 183 | 200 | 18 | 1.7E-12 | – | |
| Coils | 256 | 276 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0208500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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