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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001345
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We have found 34 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.430s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065899.1
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-like [Cicer arietinum] gi|502129390|ref|XP_004500284.1| chr0 23042529 23050320 -
2 domain predictions
1 GO term
Lj0g3v0065899.3
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like [Glycine max] gi|356569515|ref|XP_003552945.1| chr0 23042529 23050320 -
2 domain predictions
1 GO term
Lj0g3v0065899.4
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like [Glycine max] gi|356569515|ref|XP_003552945.1| chr0 23044806 23050320 -
2 domain predictions
1 GO term
Lj0g3v0212439.1
n.a. PREDICTED: probable phosphoglycerate mutase GpmB-like [Cicer arietinum] gi|502152940|ref|XP_004509162.1| chr0 107209422 107213684 -
2 domain predictions
1 GO term
Lj0g3v0212449.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Medicago truncatula] gi|357518595|ref|XP_003629586.1| chr0 107214809 107216990 -
2 domain predictions
1 GO term
Lj0g3v0212449.2
n.a. PREDICTED: probable phosphoglycerate mutase gpmB-like [Glycine max] gi|356514015|ref|XP_003525703.1| chr0 107214809 107216990 -
2 domain predictions
1 GO term
Lj0g3v0281479.1
n.a. PREDICTED: transcription factor MYB21-like [Glycine max] gi|356534359|ref|XP_003535723.1| chr0 145912294 145912662 +
2 domain predictions
1 GO term
Lj1g3v0638730.1
n.a. PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Glycine max] gi|356508122|ref|XP_003522809.1| chr1 8269510 8272972 -
2 domain predictions
1 GO term
Lj1g3v4955100.1
n.a. PREDICTED: broad-range acid phosphatase DET1-like [Cicer arietinum] gi|502117247|ref|XP_004495754.1| chr1 60181016 60183037 -
2 domain predictions
1 GO term
Lj2g3v2028930.1
n.a. 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Medicago truncatula] gi|357481571|ref|XP_003611071.1| chr2 31029930 31032307 -
2 domain predictions
1 GO term
Lj2g3v2304810.1
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3-like [Glycine max] gi|356553092|ref|XP_003544892.1| chr2 33463018 33475624 +
2 domain predictions
1 GO term
Lj3g3v1132610.1
n.a. 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Phaseolus vulgaris] gi|353227769|emb|CCE25834.1| chr3 15346420 15350905 +
2 domain predictions
1 GO term
Lj3g3v3006180.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Medicago truncatula] gi|357471937|ref|XP_003606253.1| chr3 37583399 37588153 -
2 domain predictions
1 GO term
Lj4g3v2820090.1
n.a. PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Glycine max] gi|356511107|ref|XP_003524271.1| chr4 37645189 37648993 +
2 domain predictions
1 GO term
Lj5g3v1452180.1
n.a. PREDICTED: broad-range acid phosphatase DET1-like [Cicer arietinum] gi|502117247|ref|XP_004495754.1| chr5 21432009 21433231 +
2 domain predictions
1 GO term
LotjaGi1g1v0117500.1
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|K7M821|K7M821_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0117500 LjG1.1_chr1 18468331 18480800 -
2 domain predictions
1 GO term
LotjaGi1g1v0147800.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JVH1|I1JVH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147800 LjG1.1_chr1 25239269 25244258 -
2 domain predictions
1 GO term
LotjaGi1g1v0147800.2
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JVH1|I1JVH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147800 LjG1.1_chr1 25239269 25244258 -
2 domain predictions
1 GO term
LotjaGi1g1v0245800.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|A0A072UYQ0|A0A072UYQ0_MEDTR Phosphoglycerate/bisphosphoglycerate mutase family protein; Found in the gene: LotjaGi1g1v0245800 LjG1.1_chr1 58960817 58965184 -
2 domain predictions
1 GO term
LotjaGi1g1v0245800.2
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JVH1|I1JVH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0245800 LjG1.1_chr1 58962029 58964377 -
2 domain predictions
1 GO term
LotjaGi2g1v0435400.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G05170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9MAA2|AT74_ARATH Phosphoglycerate mutase-like protein AT74; TrEMBL-Plants: tr|I3STP2|I3STP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0435400 LjG1.1_chr2 93190402 93194811 -
2 domain predictions
1 GO term
LotjaGi3g1v0480200.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT5G22620.1 phosphoglycerate/bisphosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FNJ9|CA1P_ARATH Probable 2-carboxy-D-arabinitol-1-phosphatase; TrEMBL-Plants: tr|G7JKZ0|G7JKZ0_MEDTR 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase; Found in the gene: LotjaGi3g1v0480200 LjG1.1_chr3 89771786 89777123 -
2 domain predictions
1 GO term
LotjaGi4g1v0107500.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G50520.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9SCS3|PGML4_ARATH Phosphoglycerate mutase-like protein 4; TrEMBL-Plants: tr|I3SA43|I3SA43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0107500 LjG1.1_chr4 15113950 15119765 -
2 domain predictions
1 GO term
LotjaGi4g1v0107600.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G50520.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9SCS3|PGML4_ARATH Phosphoglycerate mutase-like protein 4; TrEMBL-Plants: tr|I3T1R3|I3T1R3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0107600 LjG1.1_chr4 15120248 15123018 -
2 domain predictions
1 GO term
LotjaGi4g1v0399800.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|V7CND9|V7CND9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0399800 LjG1.1_chr4 77706171 77710305 -
2 domain predictions
1 GO term
LotjaGi5g1v0218300.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G05170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9MAA2|AT74_ARATH Phosphoglycerate mutase-like protein AT74; TrEMBL-Plants: tr|G7I7H1|G7I7H1_MEDTR Phosphoglycerate/bisphosphoglycerate mutase family protein; Found in the gene: LotjaGi5g1v0218300 LjG1.1_chr5 52451140 52452662 +
2 domain predictions
1 GO term
LotjaGi5g1v0218300.2
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G05170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9MAA2|AT74_ARATH Phosphoglycerate mutase-like protein AT74; TrEMBL-Plants: tr|G7I7H1|G7I7H1_MEDTR Phosphoglycerate/bisphosphoglycerate mutase family protein; Found in the gene: LotjaGi5g1v0218300 LjG1.1_chr5 52451253 52452662 +
2 domain predictions
1 GO term
LotjaGi5g1v0338500.1
n.a. Myb transcription factor; TAIR: AT1G68320.1 myb domain protein 62; Swiss-Prot: sp|Q9C9G7|MYB62_ARATH Transcription factor MYB62; TrEMBL-Plants: tr|G7ICA5|G7ICA5_MEDTR Myb transcription factor; Found in the gene: LotjaGi5g1v0338500 LjG1.1_chr5 65566161 65568292 -
2 domain predictions
1 GO term
LotjaGi5g1v0338900.1
n.a. Myb transcription factor; TAIR: AT1G68320.1 myb domain protein 62; Swiss-Prot: sp|Q9C9G7|MYB62_ARATH Transcription factor MYB62; TrEMBL-Plants: tr|V7BAR9|V7BAR9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0338900 LjG1.1_chr5 65602941 65604942 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.1
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|I1LLN3|I1LLN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29052648 29076251 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.2
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|I1LLN3|I1LLN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29052662 29076185 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.3
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|A0A0R0EWU2|A0A0R0EWU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29052671 29074895 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.4
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|A0A151RYA5|A0A151RYA5_CAJCA 6PF-2-K/Fru-2,6-P2ASE liver isozyme; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29053007 29056641 -
2 domain predictions
1 GO term
LotjaGi6g1v0115600.5
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|I1LLN3|I1LLN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0115600 LjG1.1_chr6 29053007 29076014 -
2 domain predictions
1 GO term