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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0338500 |
| Transcript ID | LotjaGi5g1v0338500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G68320.1 myb domain protein 62; Swiss-Prot: sp|Q9C9G7|MYB62_ARATH Transcription factor MYB62; TrEMBL-Plants: tr|G7ICA5|G7ICA5_MEDTR Myb transcription factor; Found in the gene: LotjaGi5g1v0338500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65566161..65568292) extracted from Lotus japonicus Gifu genome v1.2.
AACCCATTTAACAAAATTCCATGGGGAGTGTATATATAAAGGCATGGACATGTAGACACACTCATTGGAACTCATTTCTA AATTGCTACGAGTGTTAGCTTTAACCTTCTTACTTTATACTCCTTGCTCTTGCACAAACAAAGCAAGAACAACTAGCTTG TATATCATCATTTTCAGTAACACTAGCTATGTCTACAATTCCAAAGAGAGAGTTAGGTTCTTCTAATGAAGAAAGTGAGC TGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCTTACTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAAT ATGTTGGCCAAAAGTGCAGGTACATATTCTTTTAAGATTAATGGAATAACTTCACTTTCACTGTTTTACTTTTGTGTTTT AATATTTAGTTCCAACTTTTCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTG ACATCAAGAGAGGGAATCTTACTCCACAGGAGCAGCTGCTGATCCTTGAACTCCATTCCAAGTGGGGCAACAGGTAATGG TTTTTGCAGAAAAATAAGTGTATACATTCAGAATTAGCCCTGTTGAACCACACTAAGTTCAATAGCATGGTTAATTACAC GTTTACAAGTGTTAGAATTAATAATTGACTCTAGCTACATAATTCATTATAAGATGAAGTTACAAATTATAGTTTATGCA GTGGACATAATCAATTGTAAGGTTTCACAAGTATAAAATGTTTCATAAGTATCAGCTACTCACAGAAGTTTATTGTAGAA GATTTTCCAAAATTGCACTTACATTTATAACATTGCCCTACATAAATCACTTTTCTCATAAATGTATCCGTGCAAGTTAC TTCACTTTCAACACATTTTTACCACAATTAATCTTATCAAAATCAATTTAATTCAGAATCAGTTCGGACAACGCTGATCC AAACACGCATTAACATGCTTTTGTTGTTCATTTGGGAATAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGA CAACGAGATTAAGAATTACTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTCAACATTGAGTCTGGTAGCAAGAGAT TCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGGTTGCTTCAAAAGATGGAACAGAACCCCTCTCCCAGCATTCACCCA TCCATGACAAACATGAATTTTGGGAATTCTGTAGAAGCTTCAACCAGTTCAATGTCAACCAGCTTCAATGTTCCTTCTAT GTGTCCATCATCTCCTCCACAAAGGGAATTCATAGATGCTGCAAGCCATTTAAGCACTGTGTCCAGCCCCAGCAATAATC CTTCCTCAGATTCCTTCCAATTTTCACAGCTGCAAGAAATTTCTCAATCTCCAATATGTGCTCCCAATGTGTTTGAGAGC AATGGTTACAGCTATCCAAACCAGGAGAGTAGCTATGTTGATAATAATAGCTATGGATTGGAAGGTCTAAACCTAGATCC CCTGCCTACAATGGAAAATTATGACATTTCTCAGTTTGATTTTCAGTCTGTGGGGAGTGGCTGGATGTTAGAAAACATGG CTGAAGCTTTATGGAACATGGATGCTATGTGAATGTAGCAGTGCAGAGATCAACCATGTTCTGTCACAAAATCATGTCTT AATTTCATGTCTCACCAATAAAATCTTGTCATATCAAGTAAATAAGACATAGTGGGGCATTTACAAAGTTACGAGTAGTA TTTAAATGACGTGTCAAAATTTTATTGGTGGAACAAGGAATGAAATATAGTTTGGTGACAAGAGATTTACTTCCCACAAT ATAGACATTAGAAGGGCATGCATCTTAAGTTCTTTTTACTATGAGATGGTGTAATAGAGAAAAGAAAATTAAGGATTCTT ATGCTATGCTGATTCTTAGAAACAAAAGAGTTTCATTTGTAGAGATTAGTACCTAAGGTTATGTGATGGTCTACAAGAAA AGAAGAAAAAAAAATTCTAATGTTATATTATTGGCTTAAAAGCATTTCATGCCCCTGATGTATCAAGTTTGTGTAAATGT TACCCCTGTTCTTTTTTCGTCTATGTTTGTACCCTCCATGTTTCACAAATGT
CDS sequence (LotjaGi5g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACAATTCCAAAGAGAGAGTTAGGTTCTTCTAATGAAGAAAGTGAGCTGAGAAGAGGTCCTTGGACTCTTGAAGA AGACAGCTTACTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTGGCCAAAAGTGCAGGATTGAAGA GGACTGGAAAAAGCTGCAGACTCAGATGGTTGAATTACTTGAAACCTGACATCAAGAGAGGGAATCTTACTCCACAGGAG CAGCTGCTGATCCTTGAACTCCATTCCAAGTGGGGCAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGA CAACGAGATTAAGAATTACTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTCAACATTGAGTCTGGTAGCAAGAGAT TCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGGTTGCTTCAAAAGATGGAACAGAACCCCTCTCCCAGCATTCACCCA TCCATGACAAACATGAATTTTGGGAATTCTGTAGAAGCTTCAACCAGTTCAATGTCAACCAGCTTCAATGTTCCTTCTAT GTGTCCATCATCTCCTCCACAAAGGGAATTCATAGATGCTGCAAGCCATTTAAGCACTGTGTCCAGCCCCAGCAATAATC CTTCCTCAGATTCCTTCCAATTTTCACAGCTGCAAGAAATTTCTCAATCTCCAATATGTGCTCCCAATGTGTTTGAGAGC AATGGTTACAGCTATCCAAACCAGGAGAGTAGCTATGTTGATAATAATAGCTATGGATTGGAAGGTCTAAACCTAGATCC CCTGCCTACAATGGAAAATTATGACATTTCTCAGTTTGATTTTCAGTCTGTGGGGAGTGGCTGGATGTTAGAAAACATGG CTGAAGCTTTATGGAACATGGATGCTATGTGA
Protein sequence (LotjaGi5g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTIPKRELGSSNEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQE QLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNPSPSIHP SMTNMNFGNSVEASTSSMSTSFNVPSMCPSSPPQREFIDAASHLSTVSSPSNNPSSDSFQFSQLQEISQSPICAPNVFES NGYSYPNQESSYVDNNSYGLEGLNLDPLPTMENYDISQFDFQSVGSGWMLENMAEALWNMDAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 11 | 303 | 293 | 1.5E-118 | – | |
| PANTHER | 11 | 303 | 293 | 1.5E-118 | – | |
| ProSiteProfiles | 15 | 67 | 53 | 17.762 | ||
| Gene3D | 17 | 73 | 57 | 1.2E-19 | – | |
| SUPERFAMILY | 18 | 114 | 97 | 3.63E-31 | ||
| SMART | 19 | 69 | 51 | 2.4E-15 | ||
| Pfam | 20 | 67 | 48 | 1.8E-15 | ||
| CDD | 22 | 67 | 46 | 1.22292E-12 | ||
| ProSitePatterns | 35 | 44 | 10 | - | ||
| ProSiteProfiles | 68 | 122 | 55 | 25.751 | ||
| SMART | 72 | 120 | 49 | 2.7E-15 | ||
| Pfam | 73 | 116 | 44 | 3.0E-15 | ||
| Gene3D | 76 | 154 | 79 | 2.3E-18 | – | |
| CDD | 77 | 116 | 40 | 2.86476E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi5g1v0338500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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