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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002041
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.579s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0196629.1
n.a. RAN GTPase 3 [Theobroma cacao] gi|508783701|gb|EOY30957.1| chr0 95864421 95866730 +
3 domain predictions
3 GO terms
Lj0g3v0337519.1
n.a. RecName: Full=GTP-binding nuclear protein Ran1Agi|1370203|emb|CAA98187.1| RAN1A [Lotus japonicus] gi|1710007|sp|P54765.1|RAN1A_LOTJA chr0 176785197 176787292 +
3 domain predictions
3 GO terms
Lj1g3v1912870.1
n.a. RecName: Full=GTP-binding nuclear protein Ran1Agi|1370203|emb|CAA98187.1| RAN1A [Lotus japonicus] gi|1710007|sp|P54765.1|RAN1A_LOTJA chr1 22735039 22737443 -
3 domain predictions
3 GO terms
Lj4g3v1833610.1
n.a. PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max] gi|356515468|ref|XP_003526422.1| chr4 25603976 25605554 +
3 domain predictions
3 GO terms
LotjaGi1g1v0386300.1
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|I3T626|I3T626_LOTJA GTP-binding nuclear protein; Found in the gene: LotjaGi1g1v0386300 LjG1.1_chr1 86966310 86971154 -
4 domain predictions
3 GO terms
LotjaGi1g1v0386300.2
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|A0A078HYA5|A0A078HYA5_BRANA BnaC02g09300D protein; Found in the gene: LotjaGi1g1v0386300 LjG1.1_chr1 86969309 86971009 -
4 domain predictions
3 GO terms
LotjaGi1g1v0386600.1
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|M5XCV1|M5XCV1_PRUPE GTP-binding nuclear protein; Found in the gene: LotjaGi1g1v0386600 LjG1.1_chr1 86990656 86993491 -
4 domain predictions
3 GO terms
LotjaGi3g1v0262400_LC.1
n.a. GTP-binding nuclear protein; TAIR: AT5G20020.1 RAS-related GTP-binding nuclear protein 2; Swiss-Prot: sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2; TrEMBL-Plants: tr|A0A078HYA5|A0A078HYA5_BRANA BnaC02g09300D protein; Found in the gene: LotjaGi3g1v0262400_LC LjG1.1_chr3 48394829 48396570 +
4 domain predictions
3 GO terms
LotjaGi3g1v0296100_LC.1
n.a. GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B; TrEMBL-Plants: tr|A0A078EX10|A0A078EX10_BRANA GTP-binding nuclear protein; Found in the gene: LotjaGi3g1v0296100_LC LjG1.1_chr3 61352967 61353754 -
3 domain predictions
3 GO terms
LotjaGi4g1v0267000.1
n.a. GTP-binding nuclear protein; TAIR: AT5G20010.1 RAS-related nuclear protein-1; Swiss-Prot: sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1; TrEMBL-Plants: tr|I3SJI8|I3SJI8_LOTJA GTP-binding nuclear protein; Found in the gene: LotjaGi4g1v0267000 LjG1.1_chr4 63201680 63203607 +
4 domain predictions
3 GO terms
LotjaGi4g1v0267000.2
n.a. GTP-binding nuclear protein; TAIR: AT5G20010.1 RAS-related nuclear protein-1; Swiss-Prot: sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1; TrEMBL-Plants: tr|I3SJI8|I3SJI8_LOTJA GTP-binding nuclear protein; Found in the gene: LotjaGi4g1v0267000 LjG1.1_chr4 63201708 63203568 +
4 domain predictions
3 GO terms