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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0386600 |
| Transcript ID | LotjaGi1g1v0386600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|M5XCV1|M5XCV1_PRUPE GTP-binding nuclear protein; Found in the gene: LotjaGi1g1v0386600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86990656..86993491) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATCGAAGGGTGTAGAAAGCCGCGTTCAGGTGACGCTAGGAAACTCGAAAACCCTCCAAATATAAACCCTCGCTCG TTGCTGTATCCTTCACACACACACACACACACACACACTCATTCTCCTCTCCGATCAACACCGCTCTACCCATGGTACAC ACTCTCTCTCGCTCTCTGTTTCTCTGTTTGTTACTGTTTCAATCAATCTTGCTGTTACTGATGTGATTTGATTTGATTCG ATTACCACCAGGCTCTTCCGAATCAGCAAACCGTTGATTACCCTAATTTCAAGCTCGTCATCGTCGGTGATGGTGGCACA GGTTACTCACCTCACCTTCTCTTCCGATCTTTCTCTCCTTCAAAATGCTGCGATTTAGGGTTTTACTTTTTTCTGCCCAA AATTTGCAGGAAAGACAACCTTCGTGAAGAGGCATCTTACCGGTGAATTCGAGAAGAAATATGAACGTATGTGTGATTTA TTTAGTTTCAGTTCACGACATGCTTGTGTTCATCTGTATCTTCGTTTGCGATTGACTGATTCGTGTTTTTTGATTTGATT TGGAACAGCTACCATTGGTGTGGAGGTCCATCCTTTGGATTTCTTCACAAACTGTGGCAAGATCCGATTCTACTGCTGGG ATACTGCTGGACAAGAGAAGTTTGGGGGTCTCAGAGATGGTTACTAGTGAGTCCTCTTTTCCTACCTATATAGTATGACA AAACCCTAGTTACTTTGCTCTCTGATTGTGTGGTCAAATTTTGTGTGTTCATATTTCTTGTGTGACTATCAATTGGAAAT TTCCTCTGTTGTTTTAATGTTTATTTATGCATGGCTAGCTTGATGGTTTTCACCTAATGCTGATAAGTGATAGCTTAAAT TTTTGTTTTTAAATTTAAGCATGGGAATAAATTTTGAAGGGTTCTTCTGTTTGCTTTGTGTTTATCTGTCTATATTTTAT ATGAAGAAGACCTGATAGTTGTTTTACATTCTCGCCACCCTCTACGCTGGTGTTAATTGTAGTTTTTGTTCAATTGTTGT TGCTATTCATTGGCTATGAGGCCTAGGTTTTCTTGTTAGAATAGTTTTGCATGTCCATAACCGGGTTTGCAGTTTTTGCT CCCCTACAAAATGCTGAAATGCTGTGTGATTTTGTAGGAGTTCTAACACTCTGCTATAGAGTGAACTCAAGTTTTTGCAC TGGAAATGATTGTTTAAGCTTTGACTTATGTGAGGATATTAATCCGATTCATGTTTTGATTTAGCATTTGTTCACTTCCT GTTTTTAACATGGAATTTTGTTCTGCAGTATCCATGGGCAATGCGCCATTATAATGTTTGATGTTACTGCCCGACTGACA TACAAGAATGTCCCTACCTGGCACCGTGATCTTTGCCGGTTAGTATATATGCAACCTTTTGAACCTGTTTTTTTCTCTAA CTATTCTGCACTAAGTTTTTTATACTAACATTAGAGTCACTCTCAATTTCTGATTTTCAGGGTCTGCGAGAACATCCCCA TTGTTCTTTGTGGCAACAAGGTTGATGTGAAGAACAGACAGGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAAT CTGCAGTACTATGAGATCTCAGCCAAGAGTAACTATAACTTTGAGAAGCCTTTCCTTTATCTTGCCAGGAAACTTGCAGG GTATGTATTAGGTGCCGCGAGTTTTTACTTTTTACATCTGAAAAGCACATTGAACTAAATGTATTTTAATTGATGTTTTA CCTTCTTGTGTCAATCTTGCAGTGATCCTAACTTGCACTTTGTTGAATCTCCTGCATTGGCTCCACCTGAAGTTCAAATT GATTTAGCTGCACAACAACAGTAAGATATCTGTCATGAACTTAATTAACTCTATCTCTAACAATTGTATGCCCGGCCAAC TTGGCAAAAACATGTAGTGTGTGGGAATTCAATGTTCCGTTTTAAATTTGAAGTTGTCTTATATAAATCATTGTCACAAT GAAAATGGATGTAGGGGGTGTATAGAGTGATATATTATTGTTTCATTGTGATCTTGGAGTGTTACTGTGTCCTTGCACTT GTTATTTCTCTTAAAACTCATGTTTTGGTGTATTTTGCAGGCATGAGGCTGAGCTTGCTGCGGCTGCTAGTCAGCCCCTT CCTGATGATGATGATGATGCATTTGATTAAAAATCTGCGTGTCTGTTGATCATCTTTCTGAGTTGCTTCTTCTGTCTTAA GCTAAGCTAAGCTACACTATGTTGTGGGGTTGTATTATGGCATTTTTGGTGTGGATTTGAGTATCTGAAATTTAATCATT TATAAGATGTTTTACTTAAAATTGGAAGCCTCACTTTATGGTTAGAACACATGGATGTAGCTGTGGGCATTGTTTATGTT TACCGTCTGTGTTACAACTTACAAGGGTCTATTGAAGTGATTTGTGTTGGTTATTTGATTTCGTTTTGGTATCTATAAAG GAAGCGGTACAATATGGAGCGAGTAATAATCTCCCTAACGATGAGGAGCATTAAGCATCTGTTAAATATTAAATACTGGA GATTAAAACATGACGTATCTGAAAAATATTCTCAGACATTGTGCTGGGATGTGATGAACATGCGGTCCAATATGGAGCGA GGAGAAAATAAAATCAAAATTAACTACAAACACAGACCAATTTAATCTTTAAGCCTTTTTTTTTACCTTCGCTAGTCCTC TGAAAGACCTATTCCATTGTCCAAAATATAAAAAAAAGACCTATTCCTCCTCCTCCGATGATACAATTCAAAATTTAATT GTTTCTTTCAAAAAATGATGAAGTTCAATCCTTGCG
CDS sequence (LotjaGi1g1v0386600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTCCGAATCAGCAAACCGTTGATTACCCTAATTTCAAGCTCGTCATCGTCGGTGATGGTGGCACAGGAAAGAC AACCTTCGTGAAGAGGCATCTTACCGGTGAATTCGAGAAGAAATATGAACCTACCATTGGTGTGGAGGTCCATCCTTTGG ATTTCTTCACAAACTGTGGCAAGATCCGATTCTACTGCTGGGATACTGCTGGACAAGAGAAGTTTGGGGGTCTCAGAGAT GGTTACTATATCCATGGGCAATGCGCCATTATAATGTTTGATGTTACTGCCCGACTGACATACAAGAATGTCCCTACCTG GCACCGTGATCTTTGCCGGGTCTGCGAGAACATCCCCATTGTTCTTTGTGGCAACAAGGTTGATGTGAAGAACAGACAGG TGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATCTGCAGTACTATGAGATCTCAGCCAAGAGTAACTATAACTTT GAGAAGCCTTTCCTTTATCTTGCCAGGAAACTTGCAGGTGATCCTAACTTGCACTTTGTTGAATCTCCTGCATTGGCTCC ACCTGAAGTTCAAATTGATTTAGCTGCACAACAACAGCATGAGGCTGAGCTTGCTGCGGCTGCTAGTCAGCCCCTTCCTG ATGATGATGATGATGCATTTGATTAA
Protein sequence (LotjaGi1g1v0386600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 3.8E-161 | ||
| PANTHER | 1 | 221 | 221 | 3.8E-161 | – | |
| Gene3D | 4 | 219 | 216 | 1.7E-65 | – | |
| ProSiteProfiles | 7 | 171 | 165 | 30.003 | ||
| SMART | 11 | 174 | 164 | 3.1E-18 | – | |
| SUPERFAMILY | 13 | 194 | 182 | 4.28E-49 | ||
| CDD | 14 | 179 | 166 | 4.15603E-135 | – | |
| SMART | 14 | 174 | 161 | 2.0E-27 | – | |
| TIGRFAM | 14 | 164 | 151 | 6.7E-25 | ||
| Pfam | 15 | 171 | 157 | 4.9E-50 | ||
| SMART | 16 | 170 | 155 | 1.2E-8 | – | |
| SMART | 19 | 220 | 202 | 1.1E-168 | – | |
| PRINTS | 27 | 41 | 15 | 7.8E-61 | ||
| PRINTS | 74 | 92 | 19 | 7.8E-61 | ||
| PRINTS | 94 | 115 | 22 | 7.8E-61 | ||
| PRINTS | 130 | 148 | 19 | 7.8E-61 | ||
| PRINTS | 168 | 190 | 23 | 7.8E-61 | ||
| MobiDBLite | 199 | 221 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Nucleocytoplasmic transport | The directed movement of molecules between the nucleus and the cytoplasm. |
Expression pattern of LotjaGi1g1v0386600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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