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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0267000 |
| Transcript ID | LotjaGi4g1v0267000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTP-binding nuclear protein; TAIR: AT5G20010.1 RAS-related nuclear protein-1; Swiss-Prot: sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1; TrEMBL-Plants: tr|I3SJI8|I3SJI8_LOTJA GTP-binding nuclear protein; Found in the gene: LotjaGi4g1v0267000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63201708..63203568) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTTTTGAAGCTAGATATCGCACACAGATAGAAGTTGTATTTGAAAAGGAAAAGCGAGGGAGCGCGTCAATCTTAAGC CGTGAAATTGCATTAATTTTTGGTGGCGTAAGATTGAGGCCAATATCTGTGCGTGAATTTTAAGTCCAATACCAAACTAT ATAAGGACCCATTAACCTCCCCTCCATTCATCAATCACTCTTCTTCTTCTGCTTCACATTATTCATGGTCTGTAACGCGT GCTTTCATTCTTTATTTTTCAATTCTATAGCATTTCCTCCATGTCTAACCTTCTTGCTTTTCTCTCCTAAGGCTCTCCCC CAGCAACAAGTTGTCGACTACCCCAGTTTCAAGCTCGTCATCGTCGGCGATGGAGGAACTGGTAATTAATAATGATCATG ATCATGGAATCAATCAAACTCATCATCATGATGATTATGAATTTATGATTATAATTAACATGTTTAATTTTGTTGTCACA GGAAAAACCACTTTTGTCAAGAGACACCTAACTGGGGAATTTGAGAAGAAATATGAACGTAATAATATATTTATACATGC ATCTCCAACAACCTCTCCTTTTTACTTTTTACCATGCCTATTTATTTATTATTAATTTATGGTTTATTTTATTTAAATTT GCAACAGCAACCATTGGTGTTGAGGTTCATCCCCTGGATTTCCACACAAATTGCGGAAAAATTCGATTTTACTGCTGGGA CACTGCTGGCCAAGAAAAATTTGGTGGTCTCAGAGATGGTTATTAGTAAGTCCTAATCAAATTTCATATTCTTAATTTCA TAGCTGTTATATGTTTTGATTATATGCCTCAAAGAAGCTTCCTGCATGTTTTTTTTTTTCAATCTTTTGTGTTATTGATG ATGTCCTCATGAAAACTTGTGAATTGTGTGCAGTATTCATGGACAGTGTGCTATTATCATGTTTGATGTAACAGCGAGGT TGACATACAAGAATGTTCCTACTTGGCACAGAGATCTCTGCAGGTGAGTTCTGTAATTTGATTTACCACTTAATGATATC TTTTGCTGTTTTGTTACCTAATCATGTGACTCTTTCTTGTTATAATTGTAGGGTGTGTGAGAACATACCAATTGTTCTAT GTGGAAACAAGGTTGATGTCAAGAACAGACAGGTTAAAGCAAAACAGGTCACATTCCACAGGAAGAAGAATCTGCAGTAC TATGAGATCTCTGCAAAGAGTAACTACAATTTCGAGAAGCCTTTCTTATACCTTGCCAAGAAACTTGCAGGGTACGTAAC AAATTAGGGAAAATAAATGCTTTGTTCTTTGTTTATTTGATTTTATATTGATATGCCAATGCCATGAGTGGAAGCAAATG ATTGGTTTTTTTGATTGATCCAGGGATCCTGGTCTTCACTTTGTGGAGATGCCTGCTCTTGCTCCCCCAGATGTTGTCCT TGATCTAACTTCACAGCAAATGTAAGGGTCTTATGTGTTATTAAATTATGTGCTTTTAGCCATATTAGGCTATTCTGCAT CAGTTTTTTTGGTTGATTTTAATCTGAATTTGTGTTATTTACAGGAATGAACAAGAACTTCTTATTGCGGCAAATCAGCC TCTTCCTGATGACGATGATGAGATATTTTAGAAGACTTCTGGGCTTTAAGAGTTCTCCTGAAAAATGTTCTTTATTTTTT TTCCTTCCTTTTTTTGATGAATTGTAATCTTGGGGGATTTCATCATACAGAAAACAGGAATTTAGTTAAGGTGTGGGTCT GTTTAGGCTTAGCACAGGCATATGCAGTGTTTTCTTAGTATAGTTCCAGCAGTTATGCTATCTTTAATGGTAATCAATTG AATTATCTTGTGTCATTGAAC
CDS sequence (LotjaGi4g1v0267000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTGTAACGCGTGCTTTCATTCTTTATTTTTCAATTCTATAGCATTTCCTCCATGTCTAACCTTCTTGCTTTTCTC TCCTAAGGCTCTCCCCCAGCAACAAGTTGTCGACTACCCCAGTTTCAAGCTCGTCATCGTCGGCGATGGAGGAACTGGAA AAACCACTTTTGTCAAGAGACACCTAACTGGGGAATTTGAGAAGAAATATGAACCAACCATTGGTGTTGAGGTTCATCCC CTGGATTTCCACACAAATTGCGGAAAAATTCGATTTTACTGCTGGGACACTGCTGGCCAAGAAAAATTTGGTGGTCTCAG AGATGGTTATTATATTCATGGACAGTGTGCTATTATCATGTTTGATGTAACAGCGAGGTTGACATACAAGAATGTTCCTA CTTGGCACAGAGATCTCTGCAGGGTGTGTGAGAACATACCAATTGTTCTATGTGGAAACAAGGTTGATGTCAAGAACAGA CAGGTTAAAGCAAAACAGGTCACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATCTCTGCAAAGAGTAACTACAA TTTCGAGAAGCCTTTCTTATACCTTGCCAAGAAACTTGCAGGGGATCCTGGTCTTCACTTTGTGGAGATGCCTGCTCTTG CTCCCCCAGATGTTGTCCTTGATCTAACTTCACAGCAAATGAATGAACAAGAACTTCTTATTGCGGCAAATCAGCCTCTT CCTGATGACGATGATGAGATATTTTAG
Protein sequence (LotjaGi4g1v0267000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVCNACFHSLFFNSIAFPPCLTFLLFSPKALPQQQVVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP LDFHTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQPL PDDDDEIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 19 | 248 | 230 | 5.1E-153 | – | |
| PANTHER | 19 | 248 | 230 | 5.1E-153 | ||
| Gene3D | 32 | 247 | 216 | 4.5E-63 | – | |
| ProSiteProfiles | 35 | 199 | 165 | 29.852 | ||
| SMART | 39 | 202 | 164 | 1.4E-17 | – | |
| TIGRFAM | 42 | 192 | 151 | 2.8E-25 | ||
| SUPERFAMILY | 42 | 222 | 181 | 3.55E-49 | ||
| SMART | 42 | 202 | 161 | 8.8E-29 | – | |
| CDD | 42 | 207 | 166 | 9.75951E-133 | – | |
| Pfam | 43 | 199 | 157 | 6.8E-50 | ||
| SMART | 44 | 198 | 155 | 1.7E-8 | – | |
| SMART | 47 | 248 | 202 | 1.5E-161 | – | |
| PRINTS | 55 | 69 | 15 | 7.4E-60 | ||
| PRINTS | 102 | 120 | 19 | 7.4E-60 | ||
| PRINTS | 122 | 143 | 22 | 7.4E-60 | ||
| PRINTS | 158 | 176 | 19 | 7.4E-60 | ||
| PRINTS | 196 | 218 | 23 | 7.4E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Nucleocytoplasmic transport | The directed movement of molecules between the nucleus and the cytoplasm. |
Expression pattern of LotjaGi4g1v0267000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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