Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0196629.1

Overview

Field Value
Gene ID Lj0g3v0196629
Transcript ID Lj0g3v0196629.1
Lotus japonicus genome version MG20 v3.0
Description RAN GTPase 3 [Theobroma cacao] gi|508783701|gb|EOY30957.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24071
1 113 113 2.70E-101 –
ProSiteProfiles
PS51418
7 135 129 16.67
IPR002041
Gene3D
G3DSA:3.40.50.300
8 113 106 3.10E-32
IPR027417
SMART
SM00173
11 129 119 0.001 –
SUPERFAMILY
SSF52540
13 116 104 3.73E-29
IPR027417
TIGRFAM
TIGR00231
14 127 114 1.50E-14
IPR005225
SMART
SM00175
14 134 121 2.40E-07 –
Pfam
PF00071
15 116 102 1.90E-30
IPR001806
SMART
SM00176
19 134 116 1.30E-42 –
PRINTS
PR00627
27 41 15 5.90E-30
IPR002041
PRINTS
PR00627
74 92 19 5.90E-30
IPR002041
PRINTS
PR00627
94 115 22 5.90E-30
IPR002041

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006913
Biological process Nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0196629.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0196629.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.