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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0386300 |
| Transcript ID | LotjaGi1g1v0386300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTP-binding nuclear protein; TAIR: AT5G55190.1 RAN GTPase 3; Swiss-Prot: sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3; TrEMBL-Plants: tr|A0A078HYA5|A0A078HYA5_BRANA BnaC02g09300D protein; Found in the gene: LotjaGi1g1v0386300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86969309..86971009) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTATGCTCTCTCTCTCTCTCTCTCTCTGTTGGTTACTGTTTCAGAGTGAGTTTCTCTTGTTGTTACTGATTCCATTT GATTCGATTACCACCAGGCTCTTCCGAATCAGCAAACCGTTGATTACCCTAATTTCAAGCTCGTCATCGTCGGTGACGGT GGCACAGGTTAGCTTCTTCACCTTTCTCTCAATCTTTCTCTCCTTCCAAATGCGATCTAGGGTTTGATTTTAATCTTTTT TCTGCGTTGAATATTTGCAGGAAAAACAACCTTCGTGAAGAGGCATCTCACCGGTGAATTCGAGAAGAAATATGAACGTA TGTATGATTTGTTCAATTGCGATTAACGATGTGCATCTGTATCTTCGTTCTTGATTAGCTGATTTGTTGTTTTGGAACAG CTACCATTGGTGTGGAGGTTCACCCTTTGGATTTCTTCACAAACTGTGGTAAGATCCGATTCTACTGCTGGGATACTGCT GGACAAGAGAAGTTTGGGGGTCTCAGAGATGGTTACTAGTGAGTCATCTTCTTTGCCCATATACTATGAGAAACCCTAAT TCTTGCATGATTAAATCTAGGGCTTAGATTAAGATTTGAGGGGTTCTTCTGTTTGCTAGTTGTGAGTTTTCACCCATGCA TTTCTTTTGATGAATTATGGGTTTGGTGCTCATCAGTTATCTGTTCCTATTTTTGGATACCTATATTCTATGATGACTTG AGACAATGAGGTTTCAAGTTCCTTTGCCATGTTTCTGTGTGGACACATAATTTGATTCTCAACATCTTTTACTTGCCTTT ATATTTCATCTCTGGACTCATAGTTTAGTATGAAGATTTTTTCATTATCTTTTGCTTTGCCATAACCAGTTTGGAGATCT TCGTTCATGGGGAACACTGGATGATTTTTAATAGGAATTCTAGCACATGTGAACTGCAATGAAGTGTATTTAAGTAATTG CATTGGAAATGTTTGTGTAGTCTTTTCTTATGCTGGGACTAGGATACTAATCACTCACTCACTCACTTTTGTTTATACAT CTGTTCACTTCCTGTTTAATGCTTCTAACACTATCATTTTCTGCAGTATCCATGGGCAATGTGCCATTATTATGTTTGAT GTTACTGCCCGGCTGACATACAAGAATGTCCCTACCTGGCACCGTGATCTTTGCAGGTTTGTATGTGGTACCTTTTGAAC TGTTTTTCTCTAATTATTCTGCGCTAAGTTGTTTATACTAAATTAGAGTCATTCTCTTCACTACTGCTTTTCAGGGTCTG TGAAAACATCCCAATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAACAGGCAGGTCAAGGCAAAGCAGGTTACTTTCC ATCGGAAGAAGAACTTGCAGTACTATGAGATCTCAGCTAAGAGTAACTATAACTTTGAGAAGCCTTTCCTGTACCTTGCC AGGAAACTTGCAGGGTAGGTATTTGGTACCGCTAGTTTCTACTTTCTACATTAGCAGAGCACTTTGAACTTCATATGCTT ATTAATTGATGTTTTGCTATTCTTGTCTATTCTGCAGCGATCCCAACTTGCACTTTGTCGAATCTCCCGCATTGGCTCCA CCTGAAGTTCAAATTGATTTAGCTGCACAACAACAGTAAGATATCTGCTATAAATTTGGTTAATGTTGTCTCTAACAATG ATGTTCCTGATTAAAAATTAG
CDS sequence (LotjaGi1g1v0386300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTCCGAATCAGCAAACCGTTGATTACCCTAATTTCAAGCTCGTCATCGTCGGTGACGGTGGCACAGGAAAAAC AACCTTCGTGAAGAGGCATCTCACCGGTGAATTCGAGAAGAAATATGAACCTACCATTGGTGTGGAGGTTCACCCTTTGG ATTTCTTCACAAACTGTGGTAAGATCCGATTCTACTGCTGGGATACTGCTGGACAAGAGAAGTTTGGGGGTCTCAGAGAT GGTTACTATATCCATGGGCAATGTGCCATTATTATGTTTGATGTTACTGCCCGGCTGACATACAAGAATGTCCCTACCTG GCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAACAGGCAGG TCAAGGCAAAGCAGGTTACTTTCCATCGGAAGAAGAACTTGCAGTACTATGAGATCTCAGCTAAGAGTAACTATAACTTT GAGAAGCCTTTCCTGTACCTTGCCAGGAAACTTGCAGGCGATCCCAACTTGCACTTTGTCGAATCTCCCGCATTGGCTCC ACCTGAAGTTCAAATTGATTTAGCTGCACAACAACAGTAA
Protein sequence (LotjaGi1g1v0386300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 198 | 198 | 2.6E-148 | ||
| PANTHER | 1 | 198 | 198 | 2.6E-148 | – | |
| Gene3D | 4 | 199 | 196 | 5.5E-62 | – | |
| ProSiteProfiles | 7 | 171 | 165 | 30.003 | ||
| SMART | 11 | 174 | 164 | 3.1E-18 | – | |
| SUPERFAMILY | 13 | 192 | 180 | 3.88E-49 | ||
| TIGRFAM | 14 | 164 | 151 | 4.8E-25 | ||
| CDD | 14 | 179 | 166 | 5.93894E-133 | – | |
| SMART | 14 | 174 | 161 | 2.0E-27 | – | |
| Pfam | 15 | 171 | 157 | 3.5E-50 | ||
| SMART | 16 | 170 | 155 | 1.2E-8 | – | |
| SMART | 19 | 199 | 181 | 1.2E-145 | – | |
| PRINTS | 27 | 41 | 15 | 5.6E-61 | ||
| PRINTS | 74 | 92 | 19 | 5.6E-61 | ||
| PRINTS | 94 | 115 | 22 | 5.6E-61 | ||
| PRINTS | 130 | 148 | 19 | 5.6E-61 | ||
| PRINTS | 168 | 190 | 23 | 5.6E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Nucleocytoplasmic transport | The directed movement of molecules between the nucleus and the cytoplasm. |
Expression pattern of LotjaGi1g1v0386300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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