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LotjaGi3g1v0139400.3

Overview

Field Value
Gene ID LotjaGi3g1v0139400
Transcript ID LotjaGi3g1v0139400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Mitotic spindle assembly checkpoint MAD2B-like protein; TAIR: AT1G16590.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q94FL5|REV7_ARATH DNA polymerase zeta processivity subunit; TrEMBL-Plants: tr|G7IH36|G7IH36_MEDTR Mitotic spindle assembly checkpoint MAD2B-like protein; Found in the gene: LotjaGi3g1v0139400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:18402878..18407375) extracted from Lotus japonicus Gifu genome v1.2.

ATGAACTTGGTGGTTCAAAGGGCTTGCCATCCTCAGCTTAGATATTACATTCATGCTACTGTTTCAGGACTTCTTCCCTT TCTACAAAAGGTTGGTCATATTTGGTAATTTGATTTTTGTTTGCTTTTTTTTGTACTCAATTAGTCCAACTATATGTTGC TTCAAATGTCATATAGAATTCAGAAAAATCTTGTTCCTGCTAATTGGTAATGGAAATGTAAGATTGTTTATTTGTAGTAC TGAAAAATCCATGAATAGAGTTAGAGGATTAGGACTTACTATAGCTTCAGGCTAATCTGGAGGTTCAGACTTTGAGCTTC TCTCAAGCGGTCACGCGTACTTGCCTAGCTACAAAGTTTCAACTTGGAAAAAATTACTTTCTTGCTATGGCGCCCATTTT GCCATTATATCCGTAAATTAACTTAACTACAGTCAATATCTTATCTGGGCATAGTGAAGATCACATTTGTTGGGTGGGAA TTCAAATGCAAGCACATTAAAGATCTTTGGCACACTAAACTTATTATCAGTTTTGAGCTGTCCTGCTGTATGTCCTAATG CTTATACAGGCTGTTCGACCGATTTTATATGAAGAAAAATTGTGCAATGATTAATATTATTAAAAATTAATTTACCATTA TGTGGTGTTTGTGTCATATAAGCTTGTGACATTGCACAGAAGGGCACTGAATGAGGTAGTTCCTTGTTAGACACTTCAAA AAAAAAAAGTACAAACTCACTTGGCGCTTTGGAATCTTGTTGTGTTAAAATAATAAATTGAAAGTAGCAAATTTTTGTAG TGCCTTCTATGCCATGTCACCTCCAACATGGAATAAACAACATCATAATTGTAAATAGAATTTTAACTATATCTAATCAG TGAATACATTTTTAATATTAAATTGATCAAAAGGTCTGCATATATCAATGTGCATGTGTGTGAGAGAGAGTGTTTTGATC ATTTGTTCTTGAGACTGTACAATAGATTGTGGCCAGTCAATCTGTTGTTTTAAAGGTAAAATCTTTAGCTAGAGATTAAT TGAACCAAATCTTTTAATTGGTTTTGACTGCTATGATAAGTTCCATTGGTATTGCTATTATTGAATGCAAATGACGTCTT TTGGTTCAATCAAGTCATTTCCTTTCATTTTGCATTCAAGTTCAACAACAGGACATTTAGTTTAATTAAGGCATTTCCTT TACTTTTGCCATTGACATTATAACATCGTAACTAAATTGTATTTTATGGTTTTTTAGTTTGCAACATACACTTTTTGAAG GTCATGTGCTTTTATAGTATTACAGTTGATGGATAATGTACTTATTTTTATATGAGAAATACTTGAAGGTTGTTATATAT TAGACTTCTCATGTTTCTTTTGTCACCAGTAATAGCTAGCTTATATATGTCATCTTCTATAAGACTGTACCAAAGATATC CAGTTTTTGTTTTTATATAAAACTTCTGCAGACTGATAGATATTATGATATTCTAGGATACAACATAAACTTTTGAAAGC TTTGGATTCCTTGCTTTCAGTTGAAGCACAGTATGCTTATATTTATATGCGAAACAATTGAAGGTTGTTATATACTCATA GTAGTCAATCCCGGATAGCGGCCGGCCCCAAAAGTGGGATAGCGGGATAGCGCATAGCGGGATGGCCGCTATTCAGATTT TTTATAAATAGTTTTATATAATTAATAGTTTAATACTATATACATATAGATGCCAAACAATGTCAAATATTGCCTAAAAT TCATAACATTCATAATACAAATAGAAATCATAAGTCTTGAACAATAACACGCAACTAAAAACCACTCAAAAGCAAGGTAA AGAAGTTGGATTTGCAAATGTGAATGAAGAATGAAGCTCCATTATTTCAAGTTTGACCTTAAATGGCCTTGAGAAGTCCT AAAATGCCCCTAAAAAGGTTCCCCAACAATTTAAAACCGAGGGGCTTGAGACATTTTTCCCTTCGTCCATATAGCGCCGC GATTTCCCGCTATTTACCGCGATCTGCCTCTATTCGCGCCGCTACGGCCGCTATTGTGAAGTGCGCCGCTATTTGATTTC AGTAGCGGCACCGCTCCGCTCTGCTACGCCGCTATAGCGCGCTATTGACTACTATGTATATACTATCTCCAGTTTCAATT AACGACTTCACGTCCATTAAAAATATAGATATTTTGGTTACTAGCATTGAATTTGACCTTCATTTATATTGATTTTTCAA AATTACACTTACCCATTTTTTCAATTATCCTCGGTAAACAGAGAGTAGAGAGAGGGAGATAGAGAAAGAGAATGCAATTA ATATTCTGTATTTACTATTGTTCTGAACAAAAAATGTTGAATAACTAATTGTGGGTATTTTTGTTAAAAAATTAATTAAT TGAAGACAGACTGACTTTAAGTTTGTTCTTACAAAAATGACTAAGCTTACCTTCAATTTAGTTCTTATCAAAACGACTGG AAGTAGTCTTAGATTTCTTAGGTTTTTTTGTCATCAGCATTGAGAACTAGGTTTCATATGCCATCTTCTATAAGACGACT GCATCAAAGATGCAGTTTTTCTTTTTCTTTAAAATTTCTGCAGAGTAAGAGGTTCTGTGTAATCATTTATGTTTATGTTA TTACCACTTGGTCAAATGCGAATTGTGTTGATTAGCTGGTGATTTGGCTGTTAGGTATCTTCTAATTACTTTCTAATTTG CTTTCTTCCATTGTCTAGTTATAGTCAACGTACAAAATAAGAGATCAAGTATGCACCTAACTCACACTATTTCTCTCCAA CACATTGTACAAAAATTAAGTCAATAGCGACTAACATGTCATTATGCTCATTTTTTTTCTGAATATTTAAATTAGTCAGT AGCTAGTCAAAGAGCCACTATCCTATATAAGACACTCATCCCAGTCACATCAAACTCTCTTTGCAACTCCTTTATATTGG CATGCTGATTTTTCCCCCTTACATTACATTTAATAGGGAATAGTGGAAAGGGTGGCTGTTATTTTCTTTAATTCTGGCAA TGTTCCACTTGAGAAATTTGTTTTCAAGCTTGCGATGAACCAGTCATATGGTTCAGCAGTGGAAGAGGTTGATCTCGAGT CCTCTCTCAGATCATTCCTGATCAAGCTGTCAATCTCAGAATCTCTTACGAAGGAGCTTCCTCCTGGTAAATGCAAATAT AATCATGCTGCAGAGAAATCTGTTTCTCATTTCCATGTTTTCTTTTTAACTTGATTGCACTTTTGGTCCTTTGACTAGAA CCAATGTGTCCTCCAATATTTTTTCCTAGCAATGAAATCCCCAACCCCAATATTAGATTCTTCTATTGGTCTACGTACCA TCTAATTACTACTCCCTCCGTTCCTGATCTTTTGTTGTTTAAGGTTATGCACATTGTTTAAGAGTGCAATCATTGATATA TTTGTTGACATAAACACCCCTATTTAATGTTGAGTTAGAGTGAAGATAAAGAATGATAGTTATTGGTTAAGAAACTTGTT ATGATTTTGATTGGTGAAAATAAGAAGTGGTAGGTGAGAGATATAATATTAAATGAGGGTATACATGGAAAAATTTGAGA AAAAATGCATTGGGTTTGTAAAACAACAAAAGTTTTCGAATTTAGGTCAAAAGTTAAAACAACAAAAGATCAGGAACGGA GGGAGTAATAGATGTTAGTGACGTGGCTGACAATTTATGCACATGACATGGCATATAACTAAGTAAATCATTCTAATGGA CCTACAGATGACTTTATTCTATTTAAGTACCTCATTTTATTTTTGAGCTATTTATATTGCGGGAGTTAAATAAATTAAAG TCACCTGTTAGTTCATTACTTCAAAATGTATCATGTCTGTATGTAAATAATTCAACAAATTGCTAACTTTGGTCAGTAGT TGAAGAGAAGACTGATTAAGGACCTAATTTTTTCCAATCAGAAAAATAGGAGACAGAAACCACGCTTCAACCATTGGAGA GACTGCAAGGAAGCCTTTTCTTTTGACTTCATCCCATGCATTTAATTTTTGTCATTGTAAATTTGTTATAATCCATTTCT CTTTGCTTGTTTGAACATGTGTGCAGACACATACACACACACACACACATCTGCACACTGGCATGCCCATATCATCAATT TCATTTTATTTAAATTGCTACTTTTGAATCAACTGGAAGTGGATTTGTACTTCTTTCTTTTACACATCTGTACTGTTGTT CTTTGGTATGTATAGACAGAAACCATGGTATAAACTTTTTGCTTACCTCTCTAAACAGATTGCAGGTGGGAGATCACTGC TTACTTTCGATCCCTTCCTGAGACTGGTACAAACAAGGAAGCAGACTTATGGATCCCAACTGACACGAAGCAGTGGCAGC AGCCTCCACTTATAACCCCTATCAAGTCAATGAGTTGTGAACCTCTGTGTTTGCAGTTGTACTTGGAACATCCATGCTTA CCCGAATCAACTATTTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0139400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACTTGGTGGTTCAAAGGGCTTGCCATCCTCAGCTTAGATATTACATTCATGCTACTGTTTCAGGACTTCTTCCCTT TCTACAAAAGGGAATAGTGGAAAGGGTGGCTGTTATTTTCTTTAATTCTGGCAATGTTCCACTTGAGAAATTTGTTTTCA AGCTTGCGATGAACCAGTCATATGGTTCAGCAGTGGAAGAGGTTGATCTCGAGTCCTCTCTCAGATCATTCCTGATCAAG CTGTCAATCTCAGAATCTCTTACGAAGGAGCTTCCTCCTGATTGCAGGTGGGAGATCACTGCTTACTTTCGATCCCTTCC TGAGACTGGTACAAACAAGGAAGCAGACTTATGGATCCCAACTGACACGAAGCAGTGGCAGCAGCCTCCACTTATAACCC CTATCAAGTCAATGAGTTGTGAACCTCTGTGTTTGCAGTTGTACTTGGAACATCCATGCTTACCCGAATCAACTATTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0139400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNLVVQRACHPQLRYYIHATVSGLLPFLQKGIVERVAVIFFNSGNVPLEKFVFKLAMNQSYGSAVEEVDLESSLRSFLIK LSISESLTKELPPDCRWEITAYFRSLPETGTNKEADLWIPTDTKQWQQPPLITPIKSMSCEPLCLQLYLEHPCLPESTI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11842:SF10
1 151 151 2.1E-46 –
PANTHER
PTHR11842
1 151 151 2.1E-46 –
ProSiteProfiles
PS50815
1 149 149 21.472
IPR003511
Gene3D
G3DSA:3.30.900.10
1 152 152 4.3E-32
IPR036570
SUPERFAMILY
SSF56019
1 149 149 4.84E-26
IPR036570

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0139400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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