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LotjaGi6g1v0099800.2

Overview

Field Value
Gene ID LotjaGi6g1v0099800
Transcript ID LotjaGi6g1v0099800.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:21672652..21674797) extracted from Lotus japonicus Gifu genome v1.2.

GTGCTTTCCCTTTCAATAAGAATAAGAATCCCTAATCCATTATTATTCCTCTTTTCGAATCATTTCTCACAACTGAAAAC CAATCGTTCCCTCCCATCACAGAAATCAAAAGCTCTCAACGTTCGATTCCATGGCCGCAAGAACAGTTACCAAAGACATT ATCACCCTTCGTGGTTCCGCATCAATCGTCAGCGAGTTCTTCGGTACACACTTCTCCTCACATCCCTCTTTTCTCCAATT TCTTTGATTTTTCCACAATTCGGAAGTCTGATTTTCAATTTTGATTTTGTTTTTCAATCAGGATATGCAGCCAACAGGTT TGATTTGATTTGATCCTCTGAGTTCATCATTGTTCTGATTTTGTGGCTTGAAACTTTGTTGTTGTGATAATACTAACATG TGACTTGGAAATTTGTTCAGCATCCTTTACAACCGTGGAGTTTATCCAGAAGAGAGCTTTGTGAAGGTGAAGAAATATGG CCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAGTCTTTTATCTCCAATCTAACTGCTCAACTCTCTGGTAATTTTA AGTCCCCTAATTTGTTACGACTATCGCGTTTCTCGGTTTCATCTTTCAGAGTAACTTTTTTTTATATAGGCAAATGTTAG TTGTTAGTAAATTAGTACAAATTATCTGTCGTCGGCCCTGGCCCTCCATCTAGTATATGTAATTGGGAATCTTAGTGTTT ATTTTGAAAGAATGGTGCTGAATTTGAATCATGTTTAAGATTTTAGTTCATTTCCTTATCTTGCTGTTAATGCTTTTGAT TACCTACTCTCAACTTGATATTAATTAGTAGTTAAATTGTGATATTATTATTGACCATTGCTGATGATTGAACTGTCTGA ATTTTGTATGTTGAAAAGAATGGCTTGAATCTGGCAAGTTACAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACAGGT GAAGTCCTTGAAAGGTGGAACTTTAGCATTGAGACTGATAGTGAGGTTGTTGAGAAGAGGTGGGTCAACTTGGCATAACC AAAATCCCAGTGTAAATTTTTCCTTCATAATTTTCTCCTTTGATTAATAATGATTTTAATTTTAATTCTTCTAATTTTTC AGTGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGAGAGATACAAGCGATTATGAGGCAGATTGCTTCAAGTATCAC CTATTTGCCATGCCTGGATGAATCTTGTAAGAACTATGGCTGTCTTGTTTTTGTTTCTTCTTCTTCTTCTTCTTTGTTTT ATTCTTGATTTATCTCCTATCTCTAAACATGGCTTTCTTATTCCAGGTGTTTTTGATGTGTTAGCATACACTGATACAGA TGTGGCAGTTCCATTCACTTGGATTGAGAGTGATCCAAAACTGATTGAAAATCCGCAAATGGTGAAATTGCATTCCTTCG ATACTAAGGTGAATTTGGATTTACAGTTTGGTTGTTTATCTTACTACCAGGATTTGGTTAATTTGGCCATGACCAATCGG TTGTTTTGGCTTGCAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGACGAGCAGTAGAACCCGT TTGTGTTTTTTCTTGTTTGTTTGTTTGTTTGTTTTGCTTGTGTTTTTTCTTCAGGTCTCAAGTGAATGTTATTTTGTTAA GTGTCAGTTGTGAATTTTCTATTCACATTATTAGATATGTCTGCTTTATCAGGTTGTCAATACCATTAAACTTCGCCTCT GTCTGTATGTTTGAATTGAGCAGAAAGAATATCCCCATGCAAAGGGGATCTAGAAATTTCCTGCTCTTGAGGATTCTTGT TGCATTTCAGATTTATGAAATATTGAATCCCTAGTATAGTGATGATCACTGATCATAAAAAGTAATATTAAACCTTGCTT TTGTACATGTTTGGCTTGCAGCAGATTGAATTTTCCCTACTCTTGCTCAGATTTCTTGTTGGACTTAGGCTGGATTTTTT TAACCTTTTGTAGAATCAACTTGCAGATAGGTGAAATTGTAAAATTGGTCTCTTTTTTTGTCACATTAGTTTAAAGGCAA CAACACAAACATGTTTTGGTTCCTTAAGCAGTATGTGATTGATCCTTAAATCATTGTGTTTTGAGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0099800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGCAAGAACAGTTACCAAAGACATTATCACCCTTCGTGGTTCCGCATCAATCGTCAGCGAGTTCTTCGGATATGC AGCCAACAGCATCCTTTACAACCGTGGAGTTTATCCAGAAGAGAGCTTTGTGAAGGTGAAGAAATATGGCCTCCCCATGT TGCTTACTGAAGATGAGGGTGTCAAGTCTTTTATCTCCAATCTAACTGCTCAACTCTCTGAATGGCTTGAATCTGGCAAG TTACAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACAGGTGAAGTCCTTGAAAGGTGGAACTTTAGCATTGAGACTGA TAGTGAGGTTGTTGAGAAGAGTGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGAGAGATACAAGCGATTATGAGGC AGATTGCTTCAAGTATCACCTATTTGCCATGCCTGGATGAATCTTGTGTTTTTGATGTGTTAGCATACACTGATACAGAT GTGGCAGTTCCATTCACTTGGATTGAGAGTGATCCAAAACTGATTGAAAATCCGCAAATGGTGAAATTGCATTCCTTCGA TACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGACGAGCAGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0099800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAARTVTKDIITLRGSASIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFISNLTAQLSEWLESGK LQRVVLVIMSKATGEVLERWNFSIETDSEVVEKSVSREKSDKEIMREIQAIMRQIASSITYLPCLDESCVFDVLAYTDTD VAVPFTWIESDPKLIENPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11842
1 202 202 2.7E-109 –
PANTHER
PTHR11842:SF11
1 202 202 2.7E-109
IPR027097
Gene3D
G3DSA:3.30.900.10
1 204 204 3.8E-76
IPR036570
SUPERFAMILY
SSF56019
10 203 194 3.01E-62
IPR036570
ProSiteProfiles
PS50815
14 197 184 46.676
IPR003511
Pfam
PF02301
16 191 176 2.6E-21
IPR003511

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0007094
Biological process Mitotic spindle assembly checkpoint A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0099800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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