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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0099800 |
| Transcript ID | LotjaGi6g1v0099800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitotic spindle checkpoint protein MAD2; TAIR: AT3G25980.1 DNA-binding HORMA family protein; Swiss-Prot: sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2; TrEMBL-Plants: tr|A0A151QV91|A0A151QV91_CAJCA Mitotic spindle checkpoint protein MAD2; Found in the gene: LotjaGi6g1v0099800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21672585..21675137) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGGCCCAATAGAAAAACCATTTAAAAAAAATAAAAATAAAAAGGGGAACTAGCCGTTACTTACAGTGCTTTCCCTTT CAATAAGAATAAGAATCCCTAATCCATTATTATTCCTCTTTTCGAATCATTTCTCACAACTGAAAACCAATCGTTCCCTC CCATCACAGAAATCAAAAGCTCTCAACGTTCGATTCCATGGCCGCAAGAACAGTTACCAAAGACATTATCACCCTTCGTG GTTCCGCATCAATCGTCAGCGAGTTCTTCGGTACACACTTCTCCTCACATCCCTCTTTTCTCCAATTTCTTTGATTTTTC CACAATTCGGAAGTCTGATTTTCAATTTTGATTTTGTTTTTCAATCAGGATATGCAGCCAACAGGTTTGATTTGATTTGA TCCTCTGAGTTCATCATTGTTCTGATTTTGTGGCTTGAAACTTTGTTGTTGTGATAATACTAACATGTGACTTGGAAATT TGTTCAGCATCCTTTACAACCGTGGAGTTTATCCAGAAGAGAGCTTTGTGAAGGTGAAGAAATATGGCCTCCCCATGTTG CTTACTGAAGATGAGGGTGTCAAGTCTTTTATCTCCAATCTAACTGCTCAACTCTCTGGTAATTTTAAGTCCCCTAATTT GTTACGACTATCGCGTTTCTCGGTTTCATCTTTCAGAGTAACTTTTTTTTATATAGGCAAATGTTAGTTGTTAGTAAATT AGTACAAATTATCTGTCGTCGGCCCTGGCCCTCCATCTAGTATATGTAATTGGGAATCTTAGTGTTTATTTTGAAAGAAT GGTGCTGAATTTGAATCATGTTTAAGATTTTAGTTCATTTCCTTATCTTGCTGTTAATGCTTTTGATTACCTACTCTCAA CTTGATATTAATTAGTAGTTAAATTGTGATATTATTATTGACCATTGCTGATGATTGAACTGTCTGAATTTTGTATGTTG AAAAGAATGGCTTGAATCTGGCAAGTTACAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACAGGTGAAGTCCTTGAAA GGTGGAACTTTAGCATTGAGACTGATAGTGAGGTTGTTGAGAAGAGGTGGGTCAACTTGGCATAACCAAAATCCCAGTGT AAATTTTTCCTTCATAATTTTCTCCTTTGATTAATAATGATTTTAATTTTAATTCTTCTAATTTTTCAGTGTGTCGAGGG AAAAGAGTGACAAGGAAATCATGAGAGAGATACAAGCGATTATGAGGCAGATTGCTTCAAGTATCACCTATTTGCCATGC CTGGATGAATCTTGTAAGAACTATGGCTGTCTTGTTTTTGTTTCTTCTTCTTCTTCTTCTTTGTTTTATTCTTGATTTAT CTCCTATCTCTAAACATGGCTTTCTTATTCCAGGTGTTTTTGATGTGTTAGCATACACTGATACAGATGTGGCAGTTCCA TTCACTTGGATTGAGAGTGATCCAAAACTGATTGAAAATCCGCAAATGGTGAAATTGCATTCCTTCGATACTAAGGTGAA TTTGGATTTACAGTTTGGTTGTTTATCTTACTACCAGGATTTGGTTAATTTGGCCATGACCAATCGGTTGTTTTGGCTTG CAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGACGAGCAGTAGAACCCGTTTGTGTTTTTTCT TGTTTGTTTGTTTGTTTGTTTTGCTTGTGTTTTTTCTTCAGGTCTCAAGTGAATGTTATTTTGTTAAGTGTCAGTTGTGA ATTTTCTATTCACATTATTAGATATGTCTGCTTTATCAGGTTGTCAATACCATTAAACTTCGCCTCTGTCTGTATGTTTG AATTGAGCAGAAAGAATATCCCCATGCAAAGGGGATCTAGAAATTTCCTGCTCTTGAGGATTCTTGTTGCATTTCAGATT TATGAAATATTGAATCCCTAGTATAGTGATGATCACTGATCATAAAAAGTAATATTAAACCTTGCTTTTGTACATGTTTG GCTTGCAGCAGATTGAATTTTCCCTACTCTTGCTCAGATTTCTTGTTGGACTTAGGCTGGATTTTTTTAACCTTTTGTAG AATCAACTTGCAGATAGGTGAAATTGTAAAATTGGTCTCTTTTTTTGTCACATTAGTTTAAAGGCAACAACACAAACATG TTTTGGTTCCTTAAGCAGTATGTGATTGATCCTTAAATCATTGTGTTTTGAGAAAACATTGTAGTGATGATCACTGATCA TAAAATGTACTATTAAACCTTGTTTCTGTACATGTTTGGCTTGCAGCAGAAAGAATTTTCCCTACTCTTACTCAGATTTC TTGTTGGACTTAGGCTGGAATTTTTTAACCTTTTGTAGAATCAACTTGAAGATAGGTGAAATTGTAAAATTAGTCTTTTT TTTTTGTCACATTAGTTTAAAGGCAACAACACAAACATGTTTGTTTTGGTTCCTTAAGCACTCATGTGATTGATCCTTAA ATAATTGTGTTTTGAGAAAACATTGTAGTGATGATCACTGATCATAAAATGGGAAAAATTTATTATGGTCATG
CDS sequence (LotjaGi6g1v0099800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTTACTGAAGATGAGGGTGTCAAGTCTTTTATCTCCAATCTAACTGCTCAACTCTCTGAATGGCTTGAATCTGG CAAGTTACAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACAGGTGAAGTCCTTGAAAGGTGGAACTTTAGCATTGAGA CTGATAGTGAGGTTGTTGAGAAGAGTGTGTCGAGGGAAAAGAGTGACAAGGAAATCATGAGAGAGATACAAGCGATTATG AGGCAGATTGCTTCAAGTATCACCTATTTGCCATGCCTGGATGAATCTTGTGTTTTTGATGTGTTAGCATACACTGATAC AGATGTGGCAGTTCCATTCACTTGGATTGAGAGTGATCCAAAACTGATTGAAAATCCGCAAATGGTGAAATTGCATTCCT TCGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGACGAGCAGTAG
Protein sequence (LotjaGi6g1v0099800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLTEDEGVKSFISNLTAQLSEWLESGKLQRVVLVIMSKATGEVLERWNFSIETDSEVVEKSVSREKSDKEIMREIQAIM RQIASSITYLPCLDESCVFDVLAYTDTDVAVPFTWIESDPKLIENPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 150 | 150 | 5.4E-78 | – | |
| ProSiteProfiles | 1 | 145 | 145 | 31.711 | ||
| PANTHER | 1 | 150 | 150 | 5.4E-78 | ||
| Gene3D | 1 | 152 | 152 | 3.7E-52 | ||
| SUPERFAMILY | 2 | 151 | 150 | 1.83E-42 | ||
| Pfam | 7 | 139 | 133 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Mitotic spindle assembly checkpoint | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. |
Expression pattern of LotjaGi6g1v0099800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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