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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0105800 |
| Transcript ID | LotjaGi3g1v0105800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal L18; TAIR: AT1G08845.2 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q1MIC5|RL18_RHIL3 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A0I9RJ76|A0A0I9RJ76_LOTJA L18 ribosomal protein Heart Stopper; Found in the gene: LotjaGi3g1v0105800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13109788..13111806) extracted from Lotus japonicus Gifu genome v1.2.
AGTGTGTTTCTGCTAAATAGAAGTTATTATTGGGTATCTGAGAAACATGTTGAAGCAAGCATTTGGTAGAATATGCAGAA CCAGTGCTTACACTTGTGAAGGAAATAGAGTCTTGCCATGGATTTATGTGCCCTCGTGCTTTTTCCACAATGGACAAGTA AAGTCTTCTGGCCTTTAAAACTCAGTTTCATTTCTAATTTTTCAATTAATAATTTTACTGTTTCTTGAATTTCCTTCTCA TCTATTTACTAGAACAGTTGCATTTGGCTGAATAATAATTGAAGCGATTGGCTCAGAGTGCAACATTAGGTGGAAATTAT CTGTTTCAGATATAAAGCTCGAAAACAATATTTCCATTTTTTGTTGCTAGATAATGCTTCTAATTGAAGTTATTCATTTA TCTAATAATTCATTTCATTGATGAATATGGGAATCAAATGCAAACTATTGAAATAAATATGAATCCCTGATGCTTATGAA GTTATATTGGGTTCAATTGGCATGTTGACATGTCAAATTCTGGTAATTATAATAACATTTATTGTGAGATTTTGAATGTA TTTTCCAAGAATTTCTTCGTGAAAAGTTCTCTCATGTCCCCATTCTCATCCAACTTGTACTTTTGCATATGGGGAGAATG GAGAAGTACTTCTTTTCTCTGCAATAACAGATTTTTTTACATCTGTTAAGTTTTTTTTTAAAGGATACATCTGTTATGTA AAAAGACTTGTATACTTAATCCAAACATCTCAAATTTTTCTATTTTTTAATAAAGTACTTCTTTTTGAAACTAAATATGT TTTTGCTGGTTTCATTTCATGGCCAAATACAGTACAGTGTATGGTGTTTGTCATACTGGTTCAGGTCCTCATATTTGTTG TGTGGACTCTGAAATTTCGTGACTATTTGTTTATTTACAGTAGGTTCTAGATACTTACATCAACTTCGAGTGTACATTCT GTTGAAGATTTCTGGTCCATGTTCTGCAAGTTTTGTAAGGTTTAAATATGGGAATTATTACTACTACCCTGTCAAAACTG GTACTACCACAGTCCAAGAAAATTATTTGGAGTTACCTAAATTAGTTCATATTTGAGTTCACTTTCCTGATAGTTGCCAT GATATGTACACTCGCCATGTGTATGCACTTGCATTATGAATTTGATGGTCCCCCCATATGCTTCTATCTAGTACCGTTTA TTACTGTTCATCATGGAATTGTGCATTTCAACAGGGCATGTAGCACTTTGTAATTCCGAATCTGTTGTTGTCTGTGTGTG AAACTACCAGTTAATTGGTTTTTATCAGATCAAAGTTGAAATCACAATTCAACAGCTCTGATGAAATTGCATGAAGCATC AAAAAACATTACATGACAGCTTGAGGTGAATCATATATTAAGGGTGTGTTGGGATAAACAGTTTAATTAAGCACTTATGA CAATTAACACTTATTCCTAAGCTAATCTGAACAGTTTATAAAAATAAGTTTAAAACTGTCTTGCATACAAATAAGTTCTT TCAGACAGGGTCTAAGTATTTGTGTTTCATTTGTTTTATAATACAGGTTCATATGGCACCAAGAAGCTTTTTTGGGGTAG AGGATTTCCTTGATGATGACAACAGCCGACCTTACACATACCAAAAAGGGAAGAAGTCAAAGAATCCAAATAAGCATGTA TCATTCAAACAAAGAACAGTTGCCTTCATGGAGCCTTTCACACTTGATGTGTTTATCTCAAAACGCTTTGTATCAGCTTC AGTCACTCATAGGGTGACAAGCAAACAGGTTGCAGTTGCTGGTACCAACTCCAAGGACATTAAAGCTGTTCTTCGATCTC GTTCTGACATACCGGCGTGCATAGCCATTGGTCGGATTTTAGCTGAAAGAGCAAGAGAGGCTGATGTTTACACTGCTTCT TATACTCCAAGGGATAGGGACAAGTTCGAAGGGAAAATCAGAGCTGTAGTTCAATCACTTATTGATAATGGGATTGATAT CAAGGTTTATCTTGATTGA
CDS sequence (LotjaGi3g1v0105800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAGCAAGCATTTGGTAGAATATGCAGAACCAGTGCTTACACTTGTGAAGGAAATAGAGTCTTGCCATGGATTTA TGTGCCCTCGTGCTTTTTCCACAATGGACAAGTTCATATGGCACCAAGAAGCTTTTTTGGGGTAGAGGATTTCCTTGATG ATGACAACAGCCGACCTTACACATACCAAAAAGGGAAGAAGTCAAAGAATCCAAATAAGCATGTATCATTCAAACAAAGA ACAGTTGCCTTCATGGAGCCTTTCACACTTGATGTGTTTATCTCAAAACGCTTTGTATCAGCTTCAGTCACTCATAGGGT GACAAGCAAACAGGTTGCAGTTGCTGGTACCAACTCCAAGGACATTAAAGCTGTTCTTCGATCTCGTTCTGACATACCGG CGTGCATAGCCATTGGTCGGATTTTAGCTGAAAGAGCAAGAGAGGCTGATGTTTACACTGCTTCTTATACTCCAAGGGAT AGGGACAAGTTCGAAGGGAAAATCAGAGCTGTAGTTCAATCACTTATTGATAATGGGATTGATATCAAGGTTTATCTTGA TTGA
Protein sequence (LotjaGi3g1v0105800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKQAFGRICRTSAYTCEGNRVLPWIYVPSCFFHNGQVHMAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPNKHVSFKQR TVAFMEPFTLDVFISKRFVSASVTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILAERAREADVYTASYTPRD RDKFEGKIRAVVQSLIDNGIDIKVYLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 187 | 174 | 4.4E-107 | – | |
| PANTHER | 14 | 187 | 174 | 4.4E-107 | ||
| Gene3D | 59 | 184 | 126 | 1.6E-15 | ||
| Pfam | 66 | 181 | 116 | 3.6E-9 | ||
| CDD | 78 | 180 | 103 | 5.49975E-21 | – | |
| SUPERFAMILY | 79 | 180 | 102 | 1.07E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0105800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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