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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006380
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.058s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007959.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 3163414 3166656 -
2 domain predictions
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Lj0g3v0058449.1
n.a. PREDICTED: probable sucrose-phosphate synthase 2-like [Glycine max] gi|356553609|ref|XP_003545147.1| chr0 19228836 19236192 -
2 domain predictions
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Lj0g3v0259839.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 135042352 135043829 -
2 domain predictions
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Lj0g3v0259849.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 135043824 135044922 -
2 domain predictions
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Lj2g3v3101760.1
n.a. PREDICTED: probable sucrose-phosphate synthase 2-like [Glycine max] gi|356553609|ref|XP_003545147.1| chr2 39827440 39834245 +
2 domain predictions
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Lj3g3v1955590.1
n.a. PREDICTED: probable sucrose-phosphate synthase 2-like [Glycine max] gi|356515414|ref|XP_003526395.1| chr3 25187252 25195395 +
2 domain predictions
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Lj4g3v1893200.1
n.a. PREDICTED: probable sucrose-phosphate synthase-like [Glycine max] gi|356562959|ref|XP_003549735.1| chr4 26859089 26866141 -
2 domain predictions
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Lj6g3v0145980.1
n.a. Sucrose-phosphatase [Medicago truncatula] gi|357439171|ref|XP_003589862.1| chr6 1557467 1563410 -
2 domain predictions
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Lj6g3v0156190.1
n.a. Sucrose-phosphatase [Medicago truncatula] gi|357439173|ref|XP_003589863.1| chr6 1655731 1661874 +
2 domain predictions
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Lj6g3v0156190.2
n.a. Sucrose-phosphatase [Medicago truncatula] gi|357439173|ref|XP_003589863.1| chr6 1655731 1661874 +
2 domain predictions
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LotjaGi1g1v0042800.1
n.a. Sucrose-phosphate synthase family protein; TAIR: AT1G04920.1 sucrose phosphate synthase 3F; Swiss-Prot: sp|Q8RY24|SPSA3_ARATH Probable sucrose-phosphate synthase 3; TrEMBL-Plants: tr|A0A1J7IMQ8|A0A1J7IMQ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0042800 LjG1.1_chr1 5858747 5867181 -
2 domain predictions
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LotjaGi1g1v0042800.2
n.a. Sucrose-phosphate synthase family protein; TAIR: AT1G04920.1 sucrose phosphate synthase 3F; Swiss-Prot: sp|Q8RY24|SPSA3_ARATH Probable sucrose-phosphate synthase 3; TrEMBL-Plants: tr|A0A1J7IMQ8|A0A1J7IMQ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0042800 LjG1.1_chr1 5859740 5866582 -
2 domain predictions
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LotjaGi1g1v0042800.3
n.a. Sucrose-phosphate synthase family protein; TAIR: AT1G04920.1 sucrose phosphate synthase 3F; Swiss-Prot: sp|Q8RY24|SPSA3_ARATH Probable sucrose-phosphate synthase 3; TrEMBL-Plants: tr|A0A1J7IMQ8|A0A1J7IMQ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0042800 LjG1.1_chr1 5859740 5866582 -
2 domain predictions
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LotjaGi3g1v0334300.1
n.a. Sucrose-phosphate synthase family protein; TAIR: AT4G10120.1 Sucrose-phosphate synthase family protein; Swiss-Prot: sp|F4JLK2|SPSA4_ARATH Probable sucrose-phosphate synthase 4; TrEMBL-Plants: tr|I1KFX9|I1KFX9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0334300 LjG1.1_chr3 70430609 70438933 +
2 domain predictions
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LotjaGi3g1v0334300.2
n.a. Sucrose-phosphate synthase family protein; TAIR: AT4G10120.1 Sucrose-phosphate synthase family protein; Swiss-Prot: sp|F4JLK2|SPSA4_ARATH Probable sucrose-phosphate synthase 4; TrEMBL-Plants: tr|I1KFX9|I1KFX9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0334300 LjG1.1_chr3 70430646 70438796 +
2 domain predictions
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LotjaGi3g1v0334300.3
n.a. Sucrose-phosphate synthase family protein; TAIR: AT4G10120.1 Sucrose-phosphate synthase family protein; Swiss-Prot: sp|F4JLK2|SPSA4_ARATH Probable sucrose-phosphate synthase 4; TrEMBL-Plants: tr|I1KFX9|I1KFX9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0334300 LjG1.1_chr3 70430651 70439064 +
2 domain predictions
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LotjaGi3g1v0334300.4
n.a. Sucrose-phosphate synthase family protein; TAIR: AT4G10120.1 Sucrose-phosphate synthase family protein; Swiss-Prot: sp|F4JLK2|SPSA4_ARATH Probable sucrose-phosphate synthase 4; TrEMBL-Plants: tr|A0A151SYM0|A0A151SYM0_CAJCA Sucrose-phosphate synthase 2; Found in the gene: LotjaGi3g1v0334300 LjG1.1_chr3 70431859 70438624 +
2 domain predictions
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LotjaGi4g1v0277300.1
n.a. Sucrose-phosphate synthase; TAIR: AT5G20280.1 sucrose phosphate synthase 1F; Swiss-Prot: sp|Q43876|SPSA_VICFA Probable sucrose-phosphate synthase; TrEMBL-Plants: tr|I1MU40|I1MU40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0277300 LjG1.1_chr4 64728790 64736337 -
2 domain predictions
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LotjaGi5g1v0108200.1
n.a. Sucrose-phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1; TrEMBL-Plants: tr|I3SAL2|I3SAL2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0108200 LjG1.1_chr5 20577442 20580930 -
2 domain predictions
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LotjaGi6g1v0015900.1
n.a. Sucrose phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1; TrEMBL-Plants: tr|G7IDI2|G7IDI2_MEDTR Sucrose phosphate phosphatase; Found in the gene: LotjaGi6g1v0015900 LjG1.1_chr6 2803795 2812487 -
2 domain predictions
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LotjaGi6g1v0015900.3
n.a. Sucrose phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH13|SPP2_TOBAC Sucrose-phosphatase 2; TrEMBL-Plants: tr|G7IDI2|G7IDI2_MEDTR Sucrose phosphate phosphatase; Found in the gene: LotjaGi6g1v0015900 LjG1.1_chr6 2804329 2812507 -
2 domain predictions
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LotjaGi6g1v0015900.4
n.a. Sucrose phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1; TrEMBL-Plants: tr|G7IDI2|G7IDI2_MEDTR Sucrose phosphate phosphatase; Found in the gene: LotjaGi6g1v0015900 LjG1.1_chr6 2804329 2812507 -
2 domain predictions
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LotjaGi6g1v0015900.5
n.a. Sucrose phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1; TrEMBL-Plants: tr|G7IDI2|G7IDI2_MEDTR Sucrose phosphate phosphatase; Found in the gene: LotjaGi6g1v0015900 LjG1.1_chr6 2804806 2811964 -
2 domain predictions
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LotjaGi6g1v0015900.6
n.a. Sucrose phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1; TrEMBL-Plants: tr|G7IDI2|G7IDI2_MEDTR Sucrose phosphate phosphatase; Found in the gene: LotjaGi6g1v0015900 LjG1.1_chr6 2809357 2812050 -
2 domain predictions
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