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LotjaGi6g1v0015900.6

Overview

Field Value
Gene ID LotjaGi6g1v0015900
Transcript ID LotjaGi6g1v0015900.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Sucrose phosphatase; TAIR: AT2G35840.1 Sucrose-6F-phosphate phosphohydrolase family protein; Swiss-Prot: sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1; TrEMBL-Plants: tr|G7IDI2|G7IDI2_MEDTR Sucrose phosphate phosphatase; Found in the gene: LotjaGi6g1v0015900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:2809357..2812050) extracted from Lotus japonicus Gifu genome v1.2.

ACACATTATTTTGAATCTATGCTTGTAGAGAATTTACAAGGTTAACTTTCAGGGGTTTCCTGTGTTAGTAAAGCAAAGAG AACTATATGGATCGACTCAGCGGTTCTGCCAATCTAATGATAGTGTCTGATCTTGATTTGACAATGGTAGATATCATAAT TTTGGTAGTGATTTGGAATGATGTCTGAGGTTAAGTGTGGTGAAGCCTGTGTATCTCATTGCAGGTTGACCATGATGATC CAGAAAACCTTGCTCTTCTTAGGTTTAATGCGCTATGGGAAGCTTATTATCGTCAAAACTCTCTGCTACTTTTCTCCACT GGGAGATCACCTACTATATATGGAGAGTTGAGAAACCAAAAACCTCTGTTAACTCCAGATGTAACAATAATGTCTGTGGG GACTGAGATTACATATGGCGAATCCATGGTACCAGATGATGAGTGGACACAGTATCTGGATCATAAGTGGAACAGGGACA TAGTTGTGGAGGAAACAGCCAAGTTTCGTGAACTAGTTAGTCAAGTATGTATCTATCTATCATGGAATCTGTTAATTATG AAAATTAATCTACTCCTCATTTATCAGAATTCTTATTAGTTGAATCCTTCTCGGGAAAATGACCTTAAATGCACAATTGT ATTATCTATTAAAAACATTGTCATCCATTTTTTTATCTTATAAATTTCTGGTGTAACTGCAGTCAGATACAGAGCAACGG CCTCACAAGGTTAGCTTTTATTTGGAGAAAGGAAAGGCATCAAAAGTCATGCAAGCTCTCTCAAATTGTTTGGAAAAACG CGGGGTAAGAATATTATTATCATTATTTATAAAATCACATGATAAGATTATAGTTCATAAAACAACTTCAGTGGCAGGAA TTTTTGTGCTTCATTTAAAAGCTTTACCTAGATATTTATTTTTTGGTTAACATTTAAAGGTTAAAATCCTCGTTCTTTCT CTTTTCTGTACAGGCTATCTAGTGTGTATAGATAGCTGATCAGGTAGTCTTTTTCTTTTAAATGGCACAATTTCATTATA TTTATGGTTAACAGTGTGATATGTGATATTCCTCCTTTCTTTTCCAGTTAGATGTGAAAATCATTTATAGCAATGGTATT GCTTTGGATATATTACCCCAAGCTGCTGGCAAAGGACGAGCTCTTGCTTTTCTGCTTGAAAAGTTAAAAGCTGATGGACT ACAACCACACAACACCCTTGTTTGTGGTGATTCTGGAAATGATGCTGAACTGTTCAGTGTACCTGAAGTTTATGGGGTGC TGGTTCGTAACATCATTAGAATTAGTAAAATTTACCATATACTTGTCTGTCGTGTTTCCTAACTTTGGTTATACTGTGAA AAATTATCATCCACTTCCCTAATTTGCACTTTTGCAGGTAAGTAATGCACAGGAAGAATTGGTTCAATGGTATGCGGAAA ATGCAAGGGGCAATCTACAAATACTTCATGCAACTGAGAGGTGTGCGGCTGGTATTATACAAGCCATTGGTAACTTCTCT CTAGGTCCACATTTGTCTCCAAGAGATGTTAGAGACTCAGTGTTCCACACGAAAGTTCTTAGTCCTAGCCATGAAGTAGT GATGTTCTACCTATTTTATGAGAGATGGATGCGTGGAGAAATTGAAAATTCTGAGCAGTATATGCAATATTTAAAATCTG TCTTAGTAAGTTTTGTCCCATTTGGATATTTTAAATGCAATTGCAAAATTGCTTAGAAATCTACTGCTAAGCCTGGCCAC TGGCCAGAGCTGAGTGTCTCGCATGCTTGGGTATTTAATGTTACTTTTGGAATTGGAATAATTTGAAACCGATAGGGTAT TGAAAGAAAGCAAAGAGAAGTTTAAAATCAAGTGCGAAGACTCTTGGTTGCTTTGTGATGGGTACTTGGAGTTAGTTAGT CAGTTAAGGGTTAGCCTATAGAGTGAGTTAGTTAGTTAGTTAGTTAAGAGTTAGCCTATAAACAAGAGTGTGAAGAGGGT TTAGGTATCTTTTGGATCATTTGGGATTGGGAATTAGGGAGAGTGGCTGAGACTCTCGAATATCTCAGCATTCTTGTACA TTTCTGTTGTGAATAATATCAGGGTTCCATCACTTTGACCTGACATATGTTTTATCATAGTTAAGAGTTAAAGGAGAAAC AAAACATATGAAGTTCCAGTTAATATGTGGTCTATAAAGTTCAGATTTTTATATCTCCAATAGTCCAATTAACTTTCATC TGTTTATTTGAAAAGTTGAATGAGGGTAGGTGTTTTTTTCAATTTGAAACTAGAGTCACCTTTTATGTAGCTTTTGAAAA CTAGAAGAGGCACCACTAATTTCAAATTTTTGTCTATATGTAGCATTCTACAGGAAATTATGTCCATCCCTCTGGAATTG ACCGACCTATGCACCAAATTATAGATACCTTAAAGATGCAGTTTGGTGAGAATCAGGGCCTAGGCTTTCGGGTTTGGGTT GATCGTACGTCTTTTGCAGAAATTAGTTTGGGCTCATGGCTGGTCAAATTTGACAAGTGGGAGTTATCTGGTGAGATTAT TTTCTAACTGTAAATAACTAATCTTATATTTTGTTCCTTATGATCTTCCTTTTTGTAGCTTTGCATCTTTATTTCCTTCA TGAATTTTTTAAAATGAATGTTTAGGCTTGCAAGAGCAGGCTAGTAATATGTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0015900.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCGACTCAGCGGTTCTGCCAATCTAATGATAGTGTCTGATCTTGATTTGACAATGGTTGACCATGATGATCCAGA AAACCTTGCTCTTCTTAGGTTTAATGCGCTATGGGAAGCTTATTATCGTCAAAACTCTCTGCTACTTTTCTCCACTGGGA GATCACCTACTATATATGGAGAGTTGAGAAACCAAAAACCTCTGTTAACTCCAGATGTAACAATAATGTCTGTGGGGACT GAGATTACATATGGCGAATCCATGGTACCAGATGATGAGTGGACACAGTATCTGGATCATAAGTGGAACAGGGACATAGT TGTGGAGGAAACAGCCAAGTTTCGTGAACTAGTTAGTCAATCAGATACAGAGCAACGGCCTCACAAGGTTAGCTTTTATT TGGAGAAAGGAAAGGCATCAAAAGTCATGCAAGCTCTCTCAAATTGTTTGGAAAAACGCGGGTTAGATGTGAAAATCATT TATAGCAATGGTATTGCTTTGGATATATTACCCCAAGCTGCTGGCAAAGGACGAGCTCTTGCTTTTCTGCTTGAAAAGTT AAAAGCTGATGGACTACAACCACACAACACCCTTGTTTGTGGTGATTCTGGAAATGATGCTGAACTGTTCAGTGTACCTG AAGTTTATGGGGTGCTGGTAAGTAATGCACAGGAAGAATTGGTTCAATGGTATGCGGAAAATGCAAGGGGCAATCTACAA ATACTTCATGCAACTGAGAGGTGTGCGGCTGGTATTATACAAGCCATTGGTAACTTCTCTCTAGGTCCACATTTGTCTCC AAGAGATGTTAGAGACTCAGTGTTCCACACGAAAGTTCTTAGTCCTAGCCATGAAGTAGTGATGTTCTACCTATTTTATG AGAGATGGATGCGTGGAGAAATTGAAAATTCTGAGCAGTATATGCAATATTTAAAATCTGTCTTACATTCTACAGGAAAT TATGTCCATCCCTCTGGAATTGACCGACCTATGCACCAAATTATAGATACCTTAAAGATGCAGTTTGGTGAGAATCAGGG CCTAGGCTTTCGGGTTTGGGTTGATCGTACGTCTTTTGCAGAAATTAGTTTGGGCTCATGGCTGGTCAAATTTGACAAGT GGGAGTTATCTGGTGAGATTATTTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0015900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDRLSGSANLMIVSDLDLTMVDHDDPENLALLRFNALWEAYYRQNSLLLFSTGRSPTIYGELRNQKPLLTPDVTIMSVGT EITYGESMVPDDEWTQYLDHKWNRDIVVEETAKFRELVSQSDTEQRPHKVSFYLEKGKASKVMQALSNCLEKRGLDVKII YSNGIALDILPQAAGKGRALAFLLEKLKADGLQPHNTLVCGDSGNDAELFSVPEVYGVLVSNAQEELVQWYAENARGNLQ ILHATERCAAGIIQAIGNFSLGPHLSPRDVRDSVFHTKVLSPSHEVVMFYLFYERWMRGEIENSEQYMQYLKSVLHSTGN YVHPSGIDRPMHQIIDTLKMQFGENQGLGFRVWVDRTSFAEISLGSWLVKFDKWELSGEIIF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46521:SF11
1 379 379 1.4E-224 –
SFLD
SFLDS00003
1 262 262 0.0 –
PANTHER
PTHR46521
1 379 379 1.4E-224 –
SFLD
SFLDF00043
1 262 262 0.0 –
Pfam
PF05116
9 261 253 1.7E-95
IPR006380
TIGRFAM
TIGR01485
10 262 253 6.0E-114
IPR012847
Gene3D
G3DSA:3.40.50.1000
11 256 246 2.0E-77
IPR023214
TIGRFAM
TIGR01484
11 216 206 2.8E-29
IPR006379
CDD
cd02605
11 259 249 1.47225E-89 –
SUPERFAMILY
SSF56784
11 230 220 2.01E-24
IPR036412
TIGRFAM
TIGR01482
12 257 246 5.6E-65 –
Gene3D
G3DSA:3.90.1070.10
102 172 71 2.0E-77 –
Pfam
PF08472
262 379 118 2.6E-45
IPR013679
SUPERFAMILY
SSF54427
282 379 98 2.54E-14
IPR032710

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0005986
Biological process Sucrose biosynthetic process The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside.
Subterm of
GO:0050307
Molecular function Sucrose-phosphate phosphatase activity Catalysis of the reaction: sucrose 6F-phosphate + H2O = sucrose + phosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0015900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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