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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006554
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.012s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0292829.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DDX11-like isoform X2 [Cicer arietinum] gi|502147607|ref|XP_004506847.1| chr0 151995303 151999991 +
2 domain predictions
2 GO terms
Lj3g3v0160740.1
n.a. PREDICTED: regulator of telomere elongation helicase 1-like [Glycine max] gi|356547406|ref|XP_003542103.1| chr3 1184235 1194859 +
2 domain predictions
2 GO terms
LotjaGi2g1v0132200.2
n.a. DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200 LjG1.1_chr2 47989290 47997874 -
2 domain predictions
2 GO terms
LotjaGi2g1v0132200.3
n.a. DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200 LjG1.1_chr2 47991516 47997691 -
2 domain predictions
2 GO terms
LotjaGi3g1v0016400.1
n.a. Helicase-related family protein; TAIR: AT1G79950.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|A4K436|RTEL1_BOVIN Regulator of telomere elongation helicase 1; TrEMBL-Plants: tr|K7M3U8|K7M3U8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0016400 LjG1.1_chr3 1714784 1725668 +
2 domain predictions
2 GO terms
LotjaGi3g1v0366000.1
n.a. Rad3-related DNA helicase family protein; TAIR: AT1G79890.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|F1R345|DDX11_DANRE ATP-dependent DNA helicase DDX11; TrEMBL-Plants: tr|I1KG67|I1KG67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0366000 LjG1.1_chr3 75203864 75208571 -
2 domain predictions
2 GO terms
LotjaGi3g1v0366000.2
n.a. Rad3-related DNA helicase family protein; TAIR: AT1G79890.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|F1R345|DDX11_DANRE ATP-dependent DNA helicase DDX11; TrEMBL-Plants: tr|A0A072TSN1|A0A072TSN1_MEDTR Rad3-related DNA helicase family protein; Found in the gene: LotjaGi3g1v0366000 LjG1.1_chr3 75204043 75207631 -
2 domain predictions
2 GO terms
LotjaGi5g1v0000800.1
n.a. Helicase-related family protein; TAIR: AT1G20720.2 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog; TrEMBL-Plants: tr|K7M8G7|K7M8G7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0000800 LjG1.1_chr5 136534 150839 +
2 domain predictions
2 GO terms