Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0366000.2

Overview

Field Value
Gene ID LotjaGi3g1v0366000
Transcript ID LotjaGi3g1v0366000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Rad3-related DNA helicase family protein; TAIR: AT1G79890.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|F1R345|DDX11_DANRE ATP-dependent DNA helicase DDX11; TrEMBL-Plants: tr|A0A072TSN1|A0A072TSN1_MEDTR Rad3-related DNA helicase family protein; Found in the gene: LotjaGi3g1v0366000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:75204043..75207631) extracted from Lotus japonicus Gifu genome v1.2.

ATGACTGCTGTGAGTTTAGGCTCCAGGAAAAATCTCTGCATTAATGAAGGTTTGAACGATTTTTTCCGATTTCCTCTTGA TTTCATTTGTTTACTCACTGAAGCTGAAGTAGCTGCTAATACCTGCGTTTTACTTGTTGCCTGTTTTCCAGAAGTACTAG CTCTTGGAAATGCGACACGCATAAATGAGCGGTGCTTGGAGCTCCAGAAGAAAAAGAAAAATGATGCTACGAAAGTTAAG GTGTGTGGGGGTTTGGATTTTAGAGTAGCCTGTAAGTGTGTCATTGTTATTTTGAAAACATGCCATATTTAGGCTTAATA TTGAGAATGGTTTACCACATTTTCTTCATTCCAGTGGATGATATATGTGATACAACTTTGTGTGCTTGACTCTGTCATCA GTAATATACAGGCAAGTGTGCCAGTGTCGTCTTCTTAAATTGAGAAGATTGTGCCGAAGTTTTTATTGATGCACAAATTT TCCATTTCCATGAACATGGCCTCTTGTTCATAGCTACATTCCTTCATTTACTTTTTGTGCTTGAAGGATATATGTTAATG AACCTTAAGTAATTTGTACTTCTACAGTTCTACTTGTTCAGTATTTTAAAATTGGTCTGCTTGCACAGCTAATAACAAGA AAAATGGAAGATGACACCATAGGCACTACTAACTTCTATGCTGAATGTTACTTGGGTTACTAAGTACCCTACTCAGTAGA GTCAGTGCTCAACTACCTATTGTATTAAATAAGTAAGTAATCTAGACACTAATATTTCTTGAACAATGGTTGTCCTGACT CGCAGAGCTTAAGAGCAGGTGCAGGGGTACGCCGAACAAAGGCCTCCTCTGGTTGCCCAATGCTTAGAAAACATAGACTA CAACAAGAATTCAGGAATGAGATATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTGTGGG AACTTGTCCTTACTATGGCTCTAGAAGCATGGTTCGGAGAGCTGATCTTGTCGTCCTACCGTATCAATCTCTTCTTTCAA AATCATCTCGTGAAGCACTTGGTCTGAATTTGAAGTCCAATATTGTTATCATAGATGAGGCTCACAATTTAGCTGATTCA CTCATCAGCATGTATGACTCCAAAATTACTTTATCACAGGTATGCCTGTCATTCTATTTCTACCTTGATTGAAGTTGTAC TAGTATAAGCCAAAGTTTCATATGGGGTGATTGGTTTGAATGTCCTTTAAAACAATGGGAAATTAGTGATTTTGAGACAT GAAAGAAGCTTTGTTGTCATACCACAAGTTACTCAATGATTTGGACACCAATATTTTGGAAGTTTAGTTTTGATTTTCCC ATTGCTTATTAGAGATGGTTGTTCTCTATTTGTACAGCTGGAGAAGGTGCATTGCCATGTGGAACAGTACTTTACAAGAT TCCGGAACCTTTTGGGACCTGCTAATAGGAGATATATTCAGACGCTGATGGTCCTCACACAAGCATTTCTCCGAGTACTG CTCAATGAGAAAGATGGATATCTCATAGATTCTTGCCGTGATATAGAACATGCTGCTGAAGAAAGTAGAGCCTCTGATTT TACTATGGCCATCAATGATTTTTTATTTGAACTAAATGTGGACAATATCAACTTGGTCAAATTGTTCAAGTACATAAAGG AAAGTAATATCATGCACAAGGTGAGTCTTGCTTCTAAATATATACATTTTCTTCTGACAGAATGCCCCATGTTGCTTCTG AATTTTATGTTGTCATTTCGATGTCAAAGTTTACTTGATTTTCCAGGTTAGTGGTTATGGAGAAAAGCAGGCTACCTTGG AGAAGATATCTTCACCTGAATCAAGGGAACATGGTGAAGAGGGGAGCTGCCAGTCAGCTTTCCAGGCATTAGCTGACATA TTGCTGTCGTTGACAAACAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGACCAACCAGCCTCAGGAAACAAGG AGGGTATATTAAATATGTTATGCTCAGTGGAGAGAAGATTTTCTCTGAGGTTTGCTTGATATTGTTGCTTTAATTAGAAA AGATTTCAGCTTAAGTTTCTTTTTTAACAGATAATGAGCAAGAAAAATAACCTTGATACTTTCTCTAGATTGTAGATGAA GCACATGCCGTTGTATTAGTAGGAGGAACACTTCAACCTATAGAAGAGACAAGGGAGCGACTCTTTCCATGTTTGCCACC AAATCAGTTGCATTTTTTTTCATGTGGTCATATTGTCCCTCCAGATAGCATTATGCCAATTGCAGTCACTCGTGGGCCTA CTGGCCGCTCCTTTGATTTTAGCTACAGCTCTAGGAGCTCACCAGATGTGGTAAGTATATAATTTTTTCTCGTCTACCAT TCCTCATTATAGTTTCTCTGAAAGATTAATTGTGCAAAATGACTGACTATGCTGCATCTTGTGGTTAATAGATGCGAGAA CTAGGTCTTTTGCTATGCAACTTGGTGACCGTGGTTCCAGAAGGAATTGTAGTCTTTTTCCCTTCATTTGATTGTGAAGG TAGAGTCTATCAAAACTGGGAGTCTTCTGGCATCCTTGAAAGAATTACGAAGAGGAAGCGTGTCTTTAGAGAGCCCAGAA ATAATATGGATGTTGAATCTGTTCTTAAGGAATATAAAGATACCATTTATGGCCTATCGAGTATGAATTCAGATGCAAAC CGAGCATCTCGTAGTGGTGCAATACTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGAATCAACCTAAGTGATGGGAT GGGTCGATGTATAGTCATGGTTGGACTGCCATATGCTAGCCCGTCTGACATTGAGTTGCTGGAGAGGATAAAGCATATTG AAGGTTTTGGAAATTCAAAGTTCCTTGAAAATCCTACATTTTCTTCTAGCTATAATTTATACAGTGGAGATGCACAAGGT GGTTTTGACATCTTAAAAAGTTGCAGCCACAGGGGAAGAGAGTATTATGAAAACCTTTGCATGAAGGCTGTAAATCAATC AATAGGTATGTACTGATTATAGTTACCCCTAAAAGGTAATTATATGGAGTGTGGATTCCTCAAGAGGTTAAGCACTGATT TGTGGAATTGACTTTTCATATGGTCTTAAAGTGAAGGAGTTCAACCTCTTGAGTGATCTACCTCTTCGTTGAATAACCCA TGTCTGGAAATCATTGGTTAATAATAGTACTTAATTTTTTCACTCAGGAAGAAACTATAGGTCAAGAATGCTTGACATCT TACTGGATTTCCTGTCTGTTGTGCATTACCACCTTTACCCATCTTATTGGGTTTCTCCACTATCCTTTCACTGATAAATG TGTGTTTATTGTTATAGGTAGAGCGATCCGTCACATCAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCAT CTGATTCCTCAAAACGGAGCTTTGCCCATCCAGTCACCAAGCTTCCCCAATGGATAAAAGATCGTTTTGTTTCTACTTCC AACAACTATGGCGAAATACATAAGTTGCTGCATCAGTTTTTCAAACTCAAAAAGACATGCTGCCAATAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0366000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGCTGTGAGTTTAGGCTCCAGGAAAAATCTCTGCATTAATGAAGAAGTACTAGCTCTTGGAAATGCGACACGCAT AAATGAGCGGTGCTTGGAGCTCCAGAAGAAAAAGAAAAATGATGCTACGAAAGTTAAGAGCTTAAGAGCAGGTGCAGGGG TACGCCGAACAAAGGCCTCCTCTGGTTGCCCAATGCTTAGAAAACATAGACTACAACAAGAATTCAGGAATGAGATATCT CAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTGTGGGAACTTGTCCTTACTATGGCTCTAGAAG CATGGTTCGGAGAGCTGATCTTGTCGTCCTACCGTATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTGA ATTTGAAGTCCAATATTGTTATCATAGATGAGGCTCACAATTTAGCTGATTCACTCATCAGCATGTATGACTCCAAAATT ACTTTATCACAGCTGGAGAAGGTGCATTGCCATGTGGAACAGTACTTTACAAGATTCCGGAACCTTTTGGGACCTGCTAA TAGGAGATATATTCAGACGCTGATGGTCCTCACACAAGCATTTCTCCGAGTACTGCTCAATGAGAAAGATGGATATCTCA TAGATTCTTGCCGTGATATAGAACATGCTGCTGAAGAAAGTAGAGCCTCTGATTTTACTATGGCCATCAATGATTTTTTA TTTGAACTAAATGTGGACAATATCAACTTGGTCAAATTGTTCAAGTACATAAAGGAAAGTAATATCATGCACAAGGTTAG TGGTTATGGAGAAAAGCAGGCTACCTTGGAGAAGATATCTTCACCTGAATCAAGGGAACATGGTGAAGAGGGGAGCTGCC AGTCAGCTTTCCAGGCATTAGCTGACATATTGCTGTCGTTGACAAACAAGGACAGTGATGGAAGGATAATAATTTCCAGG TCTAGACCAACCAGCCTCAGGAAACAAGGAGGGTATATTAAATATGTTATGCTCAGTGGAGAGAAGATTTTCTCTGAGAT TGTAGATGAAGCACATGCCGTTGTATTAGTAGGAGGAACACTTCAACCTATAGAAGAGACAAGGGAGCGACTCTTTCCAT GTTTGCCACCAAATCAGTTGCATTTTTTTTCATGTGGTCATATTGTCCCTCCAGATAGCATTATGCCAATTGCAGTCACT CGTGGGCCTACTGGCCGCTCCTTTGATTTTAGCTACAGCTCTAGGAGCTCACCAGATGTGATGCGAGAACTAGGTCTTTT GCTATGCAACTTGGTGACCGTGGTTCCAGAAGGAATTGTAGTCTTTTTCCCTTCATTTGATTGTGAAGGTAGAGTCTATC AAAACTGGGAGTCTTCTGGCATCCTTGAAAGAATTACGAAGAGGAAGCGTGTCTTTAGAGAGCCCAGAAATAATATGGAT GTTGAATCTGTTCTTAAGGAATATAAAGATACCATTTATGGCCTATCGAGTATGAATTCAGATGCAAACCGAGCATCTCG TAGTGGTGCAATACTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGAATCAACCTAAGTGATGGGATGGGTCGATGTA TAGTCATGGTTGGACTGCCATATGCTAGCCCGTCTGACATTGAGTTGCTGGAGAGGATAAAGCATATTGAAGGTTTTGGA AATTCAAAGTTCCTTGAAAATCCTACATTTTCTTCTAGCTATAATTTATACAGTGGAGATGCACAAGGTGGTTTTGACAT CTTAAAAAGTTGCAGCCACAGGGGAAGAGAGTATTATGAAAACCTTTGCATGAAGGCTGTAAATCAATCAATAGGTAGAG CGATCCGTCACATCAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCATCTGATTCCTCAAAACGGAGCTTT GCCCATCCAGTCACCAAGCTTCCCCAATGGATAAAAGATCGTTTTGTTTCTACTTCCAACAACTATGGCGAAATACATAA GTTGCTGCATCAGTTTTTCAAACTCAAAAAGACATGCTGCCAATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0366000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTAVSLGSRKNLCINEEVLALGNATRINERCLELQKKKKNDATKVKSLRAGAGVRRTKASSGCPMLRKHRLQQEFRNEIS QQGPLDIEDLANLGRTVGTCPYYGSRSMVRRADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKI TLSQLEKVHCHVEQYFTRFRNLLGPANRRYIQTLMVLTQAFLRVLLNEKDGYLIDSCRDIEHAAEESRASDFTMAINDFL FELNVDNINLVKLFKYIKESNIMHKVSGYGEKQATLEKISSPESREHGEEGSCQSAFQALADILLSLTNKDSDGRIIISR SRPTSLRKQGGYIKYVMLSGEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPCLPPNQLHFFSCGHIVPPDSIMPIAVT RGPTGRSFDFSYSSRSSPDVMRELGLLLCNLVTVVPEGIVVFFPSFDCEGRVYQNWESSGILERITKRKRVFREPRNNMD VESVLKEYKDTIYGLSSMNSDANRASRSGAILLAVVGGKISEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIEGFG NSKFLENPTFSSSYNLYSGDAQGGFDILKSCSHRGREYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSF AHPVTKLPQWIKDRFVSTSNNYGEIHKLLHQFFKLKKTCCQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51193
1 194 194 15.849
IPR014013
SMART
SM00488
1 188 188 7.9E-9
IPR006554
PANTHER
PTHR11472:SF41
2 674 673 2.9E-253
IPR028331
PANTHER
PTHR11472
2 674 673 2.9E-253 –
TIGRFAM
TIGR00604
2 664 663 4.3E-121
IPR013020
Pfam
PF06733
2 165 164 2.2E-42
IPR010614
CDD
cd17968
67 148 82 1.14123E-10 –
CDD
cd17968
347 374 28 9.42974E-4 –
CDD
cd18788
392 631 240 6.47712E-48 –
Pfam
PF13307
428 642 215 2.4E-47
IPR006555
SMART
SM00491
446 633 188 7.5E-39
IPR006555

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0016818
Molecular function Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0366000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…