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Lj0g3v0292829.2

Overview

Field Value
Gene ID Lj0g3v0292829
Transcript ID Lj0g3v0292829.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable ATP-dependent RNA helicase DDX11-like isoform X2 [Cicer arietinum] gi|502147607|ref|XP_004506847.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11472
1 97 97 6.10E-296 –
PANTHER
PTHR11472:SF41
1 97 97 6.10E-296 –
ProSiteProfiles
PS51193
7 431 425 24.187
IPR014013
SMART
SM00488
9 425 417 4.50E-82
IPR006554
SUPERFAMILY
SSF52540
10 63 54 1.76E-11
IPR027417
SMART
SM00487
13 460 448 6.80E-05
IPR014001
Gene3D
G3DSA:3.40.50.300
16 63 48 2.50E-12
IPR027417
MobiDBLite
mobidb-lite
74 93 20 – –
MobiDBLite
mobidb-lite
109 136 28 – –
TIGRFAM
TIGR00604
141 728 588 5.50E-97
IPR013020
MobiDBLite
mobidb-lite
165 205 41 – –
PANTHER
PTHR11472
182 729 548 6.10E-296 –
PANTHER
PTHR11472:SF41
182 729 548 6.10E-296 –
Gene3D
G3DSA:3.40.50.300
204 266 63 2.50E-12
IPR027417
SUPERFAMILY
SSF52540
210 259 50 1.76E-11
IPR027417
Pfam
PF06733
214 402 189 4.40E-53
IPR010614
Gene3D
G3DSA:3.40.50.300
341 388 48 2.50E-12
IPR027417
SUPERFAMILY
SSF52540
349 397 49 1.76E-11
IPR027417
Pfam
PF13307
665 740 76 6.30E-07
IPR006555

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0016818
Molecular function Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0292829.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0292829.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.