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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0366000 |
| Transcript ID | LotjaGi3g1v0366000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rad3-related DNA helicase family protein; TAIR: AT1G79890.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|F1R345|DDX11_DANRE ATP-dependent DNA helicase DDX11; TrEMBL-Plants: tr|I1KG67|I1KG67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0366000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75203864..75208571) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAAGTGTTGCCGCCATGGGAGTGGCGCGAAGATTCAGTTAAAGAAGTGGGAGCACAAGTTGAGCGTGACTGCGCGAG AGAGAGAAGTGCTATCGATTCTGAAGCATGGAAAATGCATCCGAAAACCCAAAATTCCCAGGCTTCCCTTTCAAACCCTA TTCAATCCAGATCGATTTCATGAACGCCCTCTATCAATCCCTCAACCAAGGTGGCATCTCCATGTTGGAAAGCCCAACCG GTACTACTCCATTTCTATACTTTCAATTTTTTGTCATTATGCTCAAAATCAACGTTAATTTTAATTCTGGTATGTTTGTT TGTTAATTCGTGAAATGGGTGTGTTGATTGTGTTGGAAAAAGGTACTGGGAAGACCATGAGTGTCATTTGTAGTGCTTTG CAATGGGTGCTTGATCGGCGACAACAGGAAGCAGCAGGGCTTGTTGTAGGTGGTAGTAAGGATCAAGCTAATGGCAATGG TGGGGTTGGTTCAGATGATGAACCTGATTGGATGAGAGATTTCTTTGTCGAAAAAGAGGGAAAGATAGGAAATAAGAAGG AAAAGTTTGGGAAACCTGATAGTAATCGCGAAATTAAGAATGGAAGTCGTAAGGGTTTTAAGGATCTGGGTATTGGTGAG ACTCGTGTTGAAAAGGGGCGTGAGGGTTTGCGGAAAAAAAATGATGTAGTGGATGTTAATGATGAGGAATTTTTACTGGA AGAATATGAGAGTGATGATGAGAAAGCACCTGGTGGTGGTGTGTCCAAGAGGAAGGCTGTGAAATCCACTTTGGCTTCCT CTAGTGAGGATGAGTCTGATAATGGTGATGATGAGGGTGAGGAGGAGGAGAAGACATTGAAGGTTTATTTCTGTAGTCGA ACGCATTCTCAGCTTTCACAGTTCGTAAAAGAGTTGCAGAAGACGGTCTTTGCTAATGAGATGACTGCTGTGAGTTTAGG CTCCAGGAAAAATCTCTGCATTAATGAAGGTTTGAACGATTTTTTCCGATTTCCTCTTGATTTCATTTGTTTACTCACTG AAGCTGAAGTAGCTGCTAATACCTGCGTTTTACTTGTTGCCTGTTTTCCAGAAGTACTAGCTCTTGGAAATGCGACACGC ATAAATGAGCGGTGCTTGGAGCTCCAGAAGAAAAAGAAAAATGATGCTACGAAAGTTAAGGTGTGTGGGGGTTTGGATTT TAGAGTAGCCTGTAAGTGTGTCATTGTTATTTTGAAAACATGCCATATTTAGGCTTAATATTGAGAATGGTTTACCACAT TTTCTTCATTCCAGTGGATGATATATGTGATACAACTTTGTGTGCTTGACTCTGTCATCAGTAATATACAGGCAAGTGTG CCAGTGTCGTCTTCTTAAATTGAGAAGATTGTGCCGAAGTTTTTATTGATGCACAAATTTTCCATTTCCATGAACATGGC CTCTTGTTCATAGCTACATTCCTTCATTTACTTTTTGTGCTTGAAGGATATATGTTAATGAACCTTAAGTAATTTGTACT TCTACAGTTCTACTTGTTCAGTATTTTAAAATTGGTCTGCTTGCACAGCTAATAACAAGAAAAATGGAAGATGACACCAT AGGCACTACTAACTTCTATGCTGAATGTTACTTGGGTTACTAAGTACCCTACTCAGTAGAGTCAGTGCTCAACTACCTAT TGTATTAAATAAGTAAGTAATCTAGACACTAATATTTCTTGAACAATGGTTGTCCTGACTCGCAGAGCTTAAGAGCAGGT GCAGGGGTACGCCGAACAAAGGCCTCCTCTGGTTGCCCAATGCTTAGAAAACATAGACTACAACAAGAATTCAGGAATGA GATATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTGTGGGAACTTGTCCTTACTATGGCT CTAGAAGCATGGTTCGGAGAGCTGATCTTGTCGTCCTACCGTATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTT GGTCTGAATTTGAAGTCCAATATTGTTATCATAGATGAGGCTCACAATTTAGCTGATTCACTCATCAGCATGTATGACTC CAAAATTACTTTATCACAGGTATGCCTGTCATTCTATTTCTACCTTGATTGAAGTTGTACTAGTATAAGCCAAAGTTTCA TATGGGGTGATTGGTTTGAATGTCCTTTAAAACAATGGGAAATTAGTGATTTTGAGACATGAAAGAAGCTTTGTTGTCAT ACCACAAGTTACTCAATGATTTGGACACCAATATTTTGGAAGTTTAGTTTTGATTTTCCCATTGCTTATTAGAGATGGTT GTTCTCTATTTGTACAGCTGGAGAAGGTGCATTGCCATGTGGAACAGTACTTTACAAGATTCCGGAACCTTTTGGGACCT GCTAATAGGAGATATATTCAGACGCTGATGGTCCTCACACAAGCATTTCTCCGAGTACTGCTCAATGAGAAAGATGGATA TCTCATAGATTCTTGCCGTGATATAGAACATGCTGCTGAAGAAAGTAGAGCCTCTGATTTTACTATGGCCATCAATGATT TTTTATTTGAACTAAATGTGGACAATATCAACTTGGTCAAATTGTTCAAGTACATAAAGGAAAGTAATATCATGCACAAG GTGAGTCTTGCTTCTAAATATATACATTTTCTTCTGACAGAATGCCCCATGTTGCTTCTGAATTTTATGTTGTCATTTCG ATGTCAAAGTTTACTTGATTTTCCAGGTTAGTGGTTATGGAGAAAAGCAGGCTACCTTGGAGAAGATATCTTCACCTGAA TCAAGGGAACATGGTGAAGAGGGGAGCTGCCAGTCAGCTTTCCAGGCATTAGCTGACATATTGCTGTCGTTGACAAACAA GGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGACCAACCAGCCTCAGGAAACAAGGAGGGTATATTAAATATGTTA TGCTCAGTGGAGAGAAGATTTTCTCTGAGGTTTGCTTGATATTGTTGCTTTAATTAGAAAAGATTTCAGCTTAAGTTTCT TTTTTAACAGATAATGAGCAAGAAAAATAACCTTGATACTTTCTCTAGATTGTAGATGAAGCACATGCCGTTGTATTAGT AGGAGGAACACTTCAACCTATAGAAGAGACAAGGGAGCGACTCTTTCCATGTTTGCCACCAAATCAGTTGCATTTTTTTT CATGTGGTCATATTGTCCCTCCAGATAGCATTATGCCAATTGCAGTCACTCGTGGGCCTACTGGCCGCTCCTTTGATTTT AGCTACAGCTCTAGGAGCTCACCAGATGTGGTAAGTATATAATTTTTTCTCGTCTACCATTCCTCATTATAGTTTCTCTG AAAGATTAATTGTGCAAAATGACTGACTATGCTGCATCTTGTGGTTAATAGATGCGAGAACTAGGTCTTTTGCTATGCAA CTTGGTGACCGTGGTTCCAGAAGGAATTGTAGTCTTTTTCCCTTCATTTGATTGTGAAGGTAGAGTCTATCAAAACTGGG AGTCTTCTGGCATCCTTGAAAGAATTACGAAGAGGAAGCGTGTCTTTAGAGAGCCCAGAAATAATATGGATGTTGAATCT GTTCTTAAGGAATATAAAGATACCATTTATGGCCTATCGAGTATGAATTCAGATGCAAACCGAGCATCTCGTAGTGGTGC AATACTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGAATCAACCTAAGTGATGGGATGGGTCGATGTATAGTCATGG TTGGACTGCCATATGCTAGCCCGTCTGACATTGAGTTGCTGGAGAGGATAAAGCATATTGAAGGTTTTGGAAATTCAAAG TTCCTTGAAAATCCTACATTTTCTTCTAGCTATAATTTATACAGTGGAGATGCACAAGGTGGTTTTGACATCTTAAAAAG TTGCAGCCACAGGGGAAGAGAGTATTATGAAAACCTTTGCATGAAGGCTGTAAATCAATCAATAGGTATGTACTGATTAT AGTTACCCCTAAAAGGTAATTATATGGAGTGTGGATTCCTCAAGAGGTTAAGCACTGATTTGTGGAATTGACTTTTCATA TGGTCTTAAAGTGAAGGAGTTCAACCTCTTGAGTGATCTACCTCTTCGTTGAATAACCCATGTCTGGAAATCATTGGTTA ATAATAGTACTTAATTTTTTCACTCAGGAAGAAACTATAGGTCAAGAATGCTTGACATCTTACTGGATTTCCTGTCTGTT GTGCATTACCACCTTTACCCATCTTATTGGGTTTCTCCACTATCCTTTCACTGATAAATGTGTGTTTATTGTTATAGGTA GAGCGATCCGTCACATCAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCATCTGATTCCTCAAAACGGAGC TTTGCCCATCCAGTCACCAAGCTTCCCCAATGGATAAAAGATCGTTTTGTTTCTACTTCCAACAACTATGGCGAAATACA TAAGTTGCTGCATCAGTTTTTCAAACTCAAAAAGACATGCTGCCAATAGTCCCTGCAGCAGATCTCATAATGTAAAGCTA TAATTTCAATTACATTCATTTATATAGATATCCTCATTTGATTTTGTACATCACACATACACAAAAGAACACTTGAAATT GGGCAGAGCTGTAATAGTTCAAGTTGTTTAGCAATAAGTAATCAAGCTGCATAAACGAGTTAGCAAAT
CDS sequence (LotjaGi3g1v0366000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATGCATCCGAAAACCCAAAATTCCCAGGCTTCCCTTTCAAACCCTATTCAATCCAGATCGATTTCATGAACGC CCTCTATCAATCCCTCAACCAAGGTGGCATCTCCATGTTGGAAAGCCCAACCGGTACTGGGAAGACCATGAGTGTCATTT GTAGTGCTTTGCAATGGGTGCTTGATCGGCGACAACAGGAAGCAGCAGGGCTTGTTGTAGGTGGTAGTAAGGATCAAGCT AATGGCAATGGTGGGGTTGGTTCAGATGATGAACCTGATTGGATGAGAGATTTCTTTGTCGAAAAAGAGGGAAAGATAGG AAATAAGAAGGAAAAGTTTGGGAAACCTGATAGTAATCGCGAAATTAAGAATGGAAGTCGTAAGGGTTTTAAGGATCTGG GTATTGGTGAGACTCGTGTTGAAAAGGGGCGTGAGGGTTTGCGGAAAAAAAATGATGTAGTGGATGTTAATGATGAGGAA TTTTTACTGGAAGAATATGAGAGTGATGATGAGAAAGCACCTGGTGGTGGTGTGTCCAAGAGGAAGGCTGTGAAATCCAC TTTGGCTTCCTCTAGTGAGGATGAGTCTGATAATGGTGATGATGAGGGTGAGGAGGAGGAGAAGACATTGAAGGTTTATT TCTGTAGTCGAACGCATTCTCAGCTTTCACAGTTCGTAAAAGAGTTGCAGAAGACGGTCTTTGCTAATGAGATGACTGCT GTGAGTTTAGGCTCCAGGAAAAATCTCTGCATTAATGAAGAAGTACTAGCTCTTGGAAATGCGACACGCATAAATGAGCG GTGCTTGGAGCTCCAGAAGAAAAAGAAAAATGATGCTACGAAAGTTAAGAGCTTAAGAGCAGGTGCAGGGGTACGCCGAA CAAAGGCCTCCTCTGGTTGCCCAATGCTTAGAAAACATAGACTACAACAAGAATTCAGGAATGAGATATCTCAACAAGGG CCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTGTGGGAACTTGTCCTTACTATGGCTCTAGAAGCATGGTTCG GAGAGCTGATCTTGTCGTCCTACCGTATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAGT CCAATATTGTTATCATAGATGAGGCTCACAATTTAGCTGATTCACTCATCAGCATGTATGACTCCAAAATTACTTTATCA CAGCTGGAGAAGGTGCATTGCCATGTGGAACAGTACTTTACAAGATTCCGGAACCTTTTGGGACCTGCTAATAGGAGATA TATTCAGACGCTGATGGTCCTCACACAAGCATTTCTCCGAGTACTGCTCAATGAGAAAGATGGATATCTCATAGATTCTT GCCGTGATATAGAACATGCTGCTGAAGAAAGTAGAGCCTCTGATTTTACTATGGCCATCAATGATTTTTTATTTGAACTA AATGTGGACAATATCAACTTGGTCAAATTGTTCAAGTACATAAAGGAAAGTAATATCATGCACAAGGTTAGTGGTTATGG AGAAAAGCAGGCTACCTTGGAGAAGATATCTTCACCTGAATCAAGGGAACATGGTGAAGAGGGGAGCTGCCAGTCAGCTT TCCAGGCATTAGCTGACATATTGCTGTCGTTGACAAACAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGACCA ACCAGCCTCAGGAAACAAGGAGGGTATATTAAATATGTTATGCTCAGTGGAGAGAAGATTTTCTCTGAGATTGTAGATGA AGCACATGCCGTTGTATTAGTAGGAGGAACACTTCAACCTATAGAAGAGACAAGGGAGCGACTCTTTCCATGTTTGCCAC CAAATCAGTTGCATTTTTTTTCATGTGGTCATATTGTCCCTCCAGATAGCATTATGCCAATTGCAGTCACTCGTGGGCCT ACTGGCCGCTCCTTTGATTTTAGCTACAGCTCTAGGAGCTCACCAGATGTGATGCGAGAACTAGGTCTTTTGCTATGCAA CTTGGTGACCGTGGTTCCAGAAGGAATTGTAGTCTTTTTCCCTTCATTTGATTGTGAAGGTAGAGTCTATCAAAACTGGG AGTCTTCTGGCATCCTTGAAAGAATTACGAAGAGGAAGCGTGTCTTTAGAGAGCCCAGAAATAATATGGATGTTGAATCT GTTCTTAAGGAATATAAAGATACCATTTATGGCCTATCGAGTATGAATTCAGATGCAAACCGAGCATCTCGTAGTGGTGC AATACTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGAATCAACCTAAGTGATGGGATGGGTCGATGTATAGTCATGG TTGGACTGCCATATGCTAGCCCGTCTGACATTGAGTTGCTGGAGAGGATAAAGCATATTGAAGGTTTTGGAAATTCAAAG TTCCTTGAAAATCCTACATTTTCTTCTAGCTATAATTTATACAGTGGAGATGCACAAGGTGGTTTTGACATCTTAAAAAG TTGCAGCCACAGGGGAAGAGAGTATTATGAAAACCTTTGCATGAAGGCTGTAAATCAATCAATAGGTAGAGCGATCCGTC ACATCAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCATCTGATTCCTCAAAACGGAGCTTTGCCCATCCA GTCACCAAGCTTCCCCAATGGATAAAAGATCGTTTTGTTTCTACTTCCAACAACTATGGCGAAATACATAAGTTGCTGCA TCAGTTTTTCAAACTCAAAAAGACATGCTGCCAATAG
Protein sequence (LotjaGi3g1v0366000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENASENPKFPGFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVLDRRQQEAAGLVVGGSKDQA NGNGGVGSDDEPDWMRDFFVEKEGKIGNKKEKFGKPDSNREIKNGSRKGFKDLGIGETRVEKGREGLRKKNDVVDVNDEE FLLEEYESDDEKAPGGGVSKRKAVKSTLASSSEDESDNGDDEGEEEEKTLKVYFCSRTHSQLSQFVKELQKTVFANEMTA VSLGSRKNLCINEEVLALGNATRINERCLELQKKKKNDATKVKSLRAGAGVRRTKASSGCPMLRKHRLQQEFRNEISQQG PLDIEDLANLGRTVGTCPYYGSRSMVRRADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLS QLEKVHCHVEQYFTRFRNLLGPANRRYIQTLMVLTQAFLRVLLNEKDGYLIDSCRDIEHAAEESRASDFTMAINDFLFEL NVDNINLVKLFKYIKESNIMHKVSGYGEKQATLEKISSPESREHGEEGSCQSAFQALADILLSLTNKDSDGRIIISRSRP TSLRKQGGYIKYVMLSGEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPCLPPNQLHFFSCGHIVPPDSIMPIAVTRGP TGRSFDFSYSSRSSPDVMRELGLLLCNLVTVVPEGIVVFFPSFDCEGRVYQNWESSGILERITKRKRVFREPRNNMDVES VLKEYKDTIYGLSSMNSDANRASRSGAILLAVVGGKISEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIEGFGNSK FLENPTFSSSYNLYSGDAQGGFDILKSCSHRGREYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFAHP VTKLPQWIKDRFVSTSNNYGEIHKLLHQFFKLKKTCCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 911 | 905 | 0.0 | ||
| ProSiteProfiles | 7 | 431 | 425 | 24.187 | ||
| PANTHER | 7 | 911 | 905 | 0.0 | – | |
| SMART | 9 | 425 | 417 | 4.5E-82 | ||
| SUPERFAMILY | 10 | 397 | 388 | 2.99E-11 | ||
| SMART | 13 | 460 | 448 | 6.8E-5 | ||
| Gene3D | 14 | 73 | 60 | 1.1E-11 | – | |
| CDD | 35 | 59 | 25 | 1.13506E-6 | – | |
| MobiDBLite | 74 | 93 | 20 | - | – | |
| MobiDBLite | 109 | 136 | 28 | - | – | |
| TIGRFAM | 141 | 901 | 761 | 3.0E-134 | ||
| MobiDBLite | 165 | 205 | 41 | - | – | |
| CDD | 211 | 386 | 176 | 2.85669E-23 | – | |
| Pfam | 214 | 402 | 189 | 6.7E-53 | ||
| CDD | 584 | 611 | 28 | 0.00130764 | – | |
| CDD | 629 | 868 | 240 | 1.11663E-47 | – | |
| Pfam | 665 | 879 | 215 | 4.2E-47 | ||
| SMART | 683 | 870 | 188 | 7.5E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Molecular function | Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. |
Expression pattern of LotjaGi3g1v0366000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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