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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006568
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.115s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0303019.1
n.a. Zinc finger CCHC domain-containing protein [Medicago truncatula] gi|358346605|ref|XP_003637357.1| chr0 157708780 157718804 -
3 domain predictions
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Lj0g3v0332629.1
n.a. PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi|356549367|ref|XP_003543065.1| chr0 174065679 174070136 -
3 domain predictions
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Lj1g3v1991490.1
n.a. PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi|356546253|ref|XP_003541544.1| chr1 23400394 23401693 +
3 domain predictions
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Lj4g3v0450500.1
n.a. PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi|356546253|ref|XP_003541544.1| chr4 6333262 6341121 -
3 domain predictions
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Lj4g3v0450500.2
n.a. PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi|356549367|ref|XP_003543065.1| chr4 6333262 6341121 -
3 domain predictions
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Lj6g3v2044560.1
n.a. PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi|356549367|ref|XP_003543065.1| chr6 24230623 24237819 +
3 domain predictions
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LotjaGi1g1v0395800.1
n.a. Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr|A0A0B2PLT4|A0A0B2PLT4_GLYSO Splicing factor 3B subunit 2; Found in the gene: LotjaGi1g1v0395800 LjG1.1_chr1 88211860 88213902 +
3 domain predictions
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LotjaGi1g1v0508000.1
n.a. Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr|A0A0L9VGH3|A0A0L9VGH3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0508000 LjG1.1_chr1 102638717 102643250 +
3 domain predictions
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LotjaGi2g1v0056900.1
n.a. Zinc finger CCHC domain-containing protein 8; TAIR: AT5G38600.1 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q6DD45|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8; TrEMBL-Plants: tr|K7LXS2|K7LXS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056900 LjG1.1_chr2 11582422 11592623 -
3 domain predictions
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LotjaGi4g1v0053200_LC.1
n.a. Splicing factor 3B subunit 2; TAIR: AT4G21660.3 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr|A0A151T7A8|A0A151T7A8_CAJCA Splicing factor 3B subunit 2; Found in the gene: LotjaGi4g1v0053200_LC LjG1.1_chr4 6440879 6449085 -
3 domain predictions
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LotjaGi6g1v0335000.1
n.a. Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr|A0A0B2PLT4|A0A0B2PLT4_GLYSO Splicing factor 3B subunit 2; Found in the gene: LotjaGi6g1v0335000 LjG1.1_chr6 64947051 64956976 +
3 domain predictions
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