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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0508000 |
| Transcript ID | LotjaGi1g1v0508000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr|A0A0L9VGH3|A0A0L9VGH3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0508000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102638717..102643250) extracted from Lotus japonicus Gifu genome v1.2.
CAAGTTATTATCATGAAAGATATGATCTGATTACAGAAATCATGTGATATGTTTCATATTTAGCTTAATAGCCCTAGTTA TATATATATATATTTGGGATTATGATTCTTTTTTTTTCTTGACAGTCGGGATTAGGATTCTTATCCCACTCGCTGCTGTT TATTCGAAAACCCTGAGATTTCACAAAATCCTTCAACGATGATGACGGAGACGCTCCCCCACCAGAACTCTAATTCTTCC ACCGCCACCGTGAAGAGTGAGCAACGCCGCCGTAAGCAGAAGAAGATCAACAAAGCATCTCAAGAGGCGAGACCTAAAAC CGCTAAAGATAATAATGAGAACACTGATCCAAAGCAGGTAATTCTCTTCCTTCATTCATTAACGGAGATTGATTCTGAAT GTCTATAGCTGCGTCATTGTTGAGTGTTTTTGTGATTATTTTGCCATTAGAACGCAAATTGATGTCTTGAATTGTAGGTT GCTGAACAAGTTGAGTATGTATGGGAGAAGTCCGAGTTAGATGAAGGCATGGATGAACAATTTAGAAGAATCATTGAGAA ATTCAGTTTCATCGCAGGTTCTGAGGATACTTATAAGAACGATACGTCGGCTTCGGCTGCGGCTGCTACTGATGATTCTG AAGAAGAAAATGATAAAGAGCTAATAAAAAAGAAAGGCATCTCAAACAAGAAGAAAAAGCTTCAACAGAGGATGAAAATT GCTCAACTGAAACAAATTTGCTCAAGACCTGATGTTGTTGAGGTGTGGGATGCTACTGCATTAGACCCAAAGTTGCTTGT GTTTTTCAAATCTTATAGGAATACTGTACCAGTGCCTAGGCATTGGAGTCAGAAGAGAAATTTTTTGCAAGGGAAACGAG GTATTCAGAAACAACCCTTTCAGCTTCCTCATTTCATTGCTGCCACTGGAATTGAGAAAATCAGACAGGCTTATATTGAC AAAGAGGACGGTAAAAAGCTCAAACAAAAACAGAGGGAACGCATGCAACCAAAAATGGGGAAAATGGACATAGACTATTG GGTTCTTCATGATGCATTTTTCAAGTACCAGACAAAGCCAAAACTGACTTCTCTCGGGGAGCTGTATCATGAAGGAAGAG AATTTGAGGTATTACCCATGCTATAGTATTTCAGATGATTTCATATTCTGCAAACTTCTACTTATATGATAGCTTATTTT TCTGTTATCAAGTTATGTCTCAGGACAGTATAAAAACCCTGTTCTTGGCATTTCACTAGTTAGTGGATCTTTAATATGGA GCAATAGACTAAATAATTGAGTTGGCTGACATTTTGAGTTTGTAATTATTTAGGACAGAGATATCCATGTAAAATCTCTC CTCCGTCGTAGATAAAAGTATAGAATGTTTCTCATTATTGGAACTTAAAAGCTATAAAATCATTAAGTGGCGTTTTTGGA TGAAATTGATTTATATCGTAAATGAATTTTCCACCTTGTTAGTAGTATTTTGTTTCCCTGCTGAGTGGGGAAAAGGCTTT GGTGGTGGTGGTATTTCATTTGCAGTATTTTGTCCTTGAGTTGTTGGAATTCTCACTACTTTCATATTGAACTTTTATAG GGTTTTAATTTAAAGTTCCAGTGGCAGTGTTTGTGTGCTTCTTTTTAGATTATTGATCTAAGAATCATGTTATTTATCCT TTAGGTTTTAATTTGGTTCTTAGAAGGGTCTTATTGTATCTAATACATTTGTTTTTGTGCAGGTAAAGTTGAGGGAGATG AAACCTGGCATGTTATCACATGAATTGAAAGAAGCTCTTGGTATGCCTGAGGGTGCCCCTTCTCCATGGCTTATTAATAT GCAGGTAATATGAAAGTCCTGTTTGACCAATTTTAATATGATTCTATTATTGGCTCCTTGATGACATTAAATGCGTTTTG TTTTTTCAGAGATATGGCCCTCCACCATCATACCCTTCCCTGAAGATTCCTGGACTGAATTCTCCCATCCCCCCTGGGGC TAGCTTTGGTTATCATGCTGGTGGATGGGGCAAGCCTCCAGTTGATGAGGTATATTTTTTTATGTATCCACTTTTTGTTT TATCATTTGTTCTTTTGAATTCCCCTTTTTGTCTCATTGACCAGTTTACTTCTATTCATCTAAAGCAGTATGGGCGTGCA TTATATGGAGATGTTTTTGGTGTTCAACAACAAGAGCATCCTAACTATGAGGTTTGATTTAATTAGAAGTTTTATGTGAT TAAAATTGTAAATTCTTTTCAACAAAGCTGCCTTTTTTCAACTTCAGTGCCAGACTTTAATCTTAACTTGTTTTGAAGCT TATGAATCTCTAGTGTCTGTGCATGCCTGTAGTTTTGTTCTTGTTTTCTTATCCATTGTGCTTTTGATGTAGCAAACATT TTAGCAATGAAAATGAGAGAAATGAAAAGGTAAAAGTGAAATTAGCATTAAAACCACAAATATATGGCTTATCACTACTC TTCCTCATGATAAAAAGTATATTCCTTCTCTTTTTGTTCCTCCTTTTGTTCTCATTCCTCCTATCAGTCCTGTCATTTAT TCAATAACAAACCAAAGCTTTTTCTTACTAGGTCGTGTCAGCTTCGTAGATCAAATCTTGCCATAATGTCCTATCATAGA TCATGTTTAATGAGTAATCATAAAACAAAAATAATTCCTTCCATTGATTGAAAGCAAAAATTTCTTTGGGTCAGAAATAA AAATAAGTAATTTTACTTAGGATCCCCTTACCATATCAACTAAAAAATGGTTAATAATTTCATAGTGGTATTCGTTTTTA GGATTTTGATTAATGTTCTCGTAATAATGCAGGAAGAGCCAGTTGATAAGACCAAACACTGGGGTGATTTGGAGGAGGTG GAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAATGCAGGGGGAGGAACTTGAAGCTGG TATTCAGTCTGTTGATAGTATCTCAAGGTATTGTTATTTCAGCATTTTATTTTCGTGTTTATGTAATGTGGAGGCTTATA GTGCATTTTTTTAAGGTTGGTTGTATTTAGATTTCTTACCATACCGTTCTTTGACCTCGTTTGCTTTGTGTTATTCATTT CAGCGCACCCACTGGGGTAGAGACACCTGATGTTATTGACCTACGGAAGCAACAGAGGAAGGAGCCTAAGGAGCCTGAGA GACCTCTTTATCTGGTGAGTCTTTTCTGTTGCTGTTTTTCCATCAGCTTTGACTTCTGTTTTCACTAGTTATACCAATAT TTTTTTTGTCATTTTCATTGCAGGTGCTTGAAGAGAAGGAAGAAAAAATTGCTCCAGGAACTTTCCTTGGAACCACTCAC ACGTATGCAATACTTGCTCAACTTTATTTTTTCTTATTGTGTTTGTGTTGCATTTTTTTTTCCTTCACAAGTTCTGATGT TCCTTTTTCTCCTTTCTGCAGTTATGCGGTTGGCACTGGCGGCACCCAGGACAAGTCAGGTGCTAAAAGGGTAATGGTTT TCTCCCTTTTGTATTTGGTGGGTGGGGGTTACTTCATGATGATATTTCTTTTAAAAGCGTACCATGGCTTCTGGCTTTGG CACTTGCAGGTTGATTTGCTTAAAGGACAGAAGTCAGATAAAGTGGACGTTACAATACAGCCGGAAGAGTTGGAAACAAT GGATAATGATGCTTTGCATGCCAAGTATGATTTATTTAGCTTTTCTAATAATTTTTAATAGTTCCTGAGTTGTGTTGTGA CATTGTTGGGCAATAATTTCTTAATTTCTAATCCAAGTTACATATGGTGGAACTATACAGATATGTAGAGGCAAGGGAGG AAGAGAATTCGCGTAGTCATCATGAAGATTTTAGTCAAATGGTTGCAGAGGTAAGTAAATTCACCCGTAAAATCATATGC TTTAAGATTTTCTATCGTACTATCATATCATGATTTGTATTTAATTTTGTTGTTATCTGGTTCAGAATGAGAAGAAGAGA AAAAGAAAGATGCAAGAAAAGGAGGGCAAGAGGAGGAAGAAGGACTTCTTTTAGGGGGGCAGGCGGGCGCCATTTACCTT TTCCTTTGCTTGCAAATGGCCATGGAGCGTGCTAACCTTTATTGATATTAGTTGGAATTAGTTAAAGGAGATGACTTATT GAGATTCAGTTATTTAATTAGCTCTCAATACACGTAATATTAATATTGTATTCTGTTGAAGATTAATACAACTTTCACAT TCATTCACTTGATAACCTTTGCCCCCCTCGTGCAATTCTCTACTTCCCATGAATAGAAAATTTGATTGAACGCAGGTGGG AACTAGTAAGAATGTAAGATATCCATGCAATTGCACCAGTTGCTGTCGGTGGGTCGCGGTTGATTTTACCTATATTATTA ACAATTTGTATATAAATAATGAATTATTTATTAAATAAAATTTAATGAAAATCAGATAAGTGAAGTTATTCTCACTAGTG CTCTCGAATATTTGTCCTTTTCTATTTTCTATTTAAATGACTGTCTATTTTTTT
CDS sequence (LotjaGi1g1v0508000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACGGAGACGCTCCCCCACCAGAACTCTAATTCTTCCACCGCCACCGTGAAGAGTGAGCAACGCCGCCGTAAGCA GAAGAAGATCAACAAAGCATCTCAAGAGGCGAGACCTAAAACCGCTAAAGATAATAATGAGAACACTGATCCAAAGCAGG TTGCTGAACAAGTTGAGTATGTATGGGAGAAGTCCGAGTTAGATGAAGGCATGGATGAACAATTTAGAAGAATCATTGAG AAATTCAGTTTCATCGCAGGTTCTGAGGATACTTATAAGAACGATACGTCGGCTTCGGCTGCGGCTGCTACTGATGATTC TGAAGAAGAAAATGATAAAGAGCTAATAAAAAAGAAAGGCATCTCAAACAAGAAGAAAAAGCTTCAACAGAGGATGAAAA TTGCTCAACTGAAACAAATTTGCTCAAGACCTGATGTTGTTGAGGTGTGGGATGCTACTGCATTAGACCCAAAGTTGCTT GTGTTTTTCAAATCTTATAGGAATACTGTACCAGTGCCTAGGCATTGGAGTCAGAAGAGAAATTTTTTGCAAGGGAAACG AGGTATTCAGAAACAACCCTTTCAGCTTCCTCATTTCATTGCTGCCACTGGAATTGAGAAAATCAGACAGGCTTATATTG ACAAAGAGGACGGTAAAAAGCTCAAACAAAAACAGAGGGAACGCATGCAACCAAAAATGGGGAAAATGGACATAGACTAT TGGGTTCTTCATGATGCATTTTTCAAGTACCAGACAAAGCCAAAACTGACTTCTCTCGGGGAGCTGTATCATGAAGGAAG AGAATTTGAGGTAAAGTTGAGGGAGATGAAACCTGGCATGTTATCACATGAATTGAAAGAAGCTCTTGGTATGCCTGAGG GTGCCCCTTCTCCATGGCTTATTAATATGCAGAGATATGGCCCTCCACCATCATACCCTTCCCTGAAGATTCCTGGACTG AATTCTCCCATCCCCCCTGGGGCTAGCTTTGGTTATCATGCTGGTGGATGGGGCAAGCCTCCAGTTGATGAGTATGGGCG TGCATTATATGGAGATGTTTTTGGTGTTCAACAACAAGAGCATCCTAACTATGAGGAAGAGCCAGTTGATAAGACCAAAC ACTGGGGTGATTTGGAGGAGGTGGAGGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAATG CAGGGGGAGGAACTTGAAGCTGGTATTCAGTCTGTTGATAGTATCTCAAGCGCACCCACTGGGGTAGAGACACCTGATGT TATTGACCTACGGAAGCAACAGAGGAAGGAGCCTAAGGAGCCTGAGAGACCTCTTTATCTGGTGCTTGAAGAGAAGGAAG AAAAAATTGCTCCAGGAACTTTCCTTGGAACCACTCACACTTATGCGGTTGGCACTGGCGGCACCCAGGACAAGTCAGGT GCTAAAAGGGTTGATTTGCTTAAAGGACAGAAGTCAGATAAAGTGGACGTTACAATACAGCCGGAAGAGTTGGAAACAAT GGATAATGATGCTTTGCATGCCAAATATGTAGAGGCAAGGGAGGAAGAGAATTCGCGTAGTCATCATGAAGATTTTAGTC AAATGGTTGCAGAGAATGAGAAGAAGAGAAAAAGAAAGATGCAAGAAAAGGAGGGCAAGAGGAGGAAGAAGGACTTCTTT TAG
Protein sequence (LotjaGi1g1v0508000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTETLPHQNSNSSTATVKSEQRRRKQKKINKASQEARPKTAKDNNENTDPKQVAEQVEYVWEKSELDEGMDEQFRRIIE KFSFIAGSEDTYKNDTSASAAAATDDSEEENDKELIKKKGISNKKKKLQQRMKIAQLKQICSRPDVVEVWDATALDPKLL VFFKSYRNTVPVPRHWSQKRNFLQGKRGIQKQPFQLPHFIAATGIEKIRQAYIDKEDGKKLKQKQRERMQPKMGKMDIDY WVLHDAFFKYQTKPKLTSLGELYHEGREFEVKLREMKPGMLSHELKEALGMPEGAPSPWLINMQRYGPPPSYPSLKIPGL NSPIPPGASFGYHAGGWGKPPVDEYGRALYGDVFGVQQQEHPNYEEEPVDKTKHWGDLEEVEEEEEEEEEEEEEEEEEEM QGEELEAGIQSVDSISSAPTGVETPDVIDLRKQQRKEPKEPERPLYLVLEEKEEKIAPGTFLGTTHTYAVGTGGTQDKSG AKRVDLLKGQKSDKVDVTIQPEELETMDNDALHAKYVEAREEENSRSHHEDFSQMVAENEKKRKRKMQEKEGKRRKKDFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 56 | 56 | - | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| PANTHER | 13 | 559 | 547 | 1.9E-260 | – | |
| PANTHER | 13 | 559 | 547 | 1.9E-260 | – | |
| MobiDBLite | 32 | 50 | 19 | - | – | |
| MobiDBLite | 94 | 113 | 20 | - | – | |
| Coils | 118 | 138 | 21 | - | – | |
| Pfam | 143 | 268 | 126 | 1.5E-55 | ||
| SMART | 273 | 326 | 54 | 9.4E-24 | ||
| Pfam | 277 | 321 | 45 | 5.9E-20 | ||
| MobiDBLite | 361 | 448 | 88 | - | – | |
| MobiDBLite | 363 | 378 | 16 | - | – | |
| Coils | 375 | 408 | 34 | - | – | |
| MobiDBLite | 379 | 404 | 26 | - | – | |
| MobiDBLite | 428 | 448 | 21 | - | – | |
| MobiDBLite | 519 | 560 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0508000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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