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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0395800 |
| Transcript ID | LotjaGi1g1v0395800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr|A0A0B2PLT4|A0A0B2PLT4_GLYSO Splicing factor 3B subunit 2; Found in the gene: LotjaGi1g1v0395800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88211860..88213902) extracted from Lotus japonicus Gifu genome v1.2.
ACTAAACCTATTTTCCTTCTCTAATCACCTTTGAGATTTAGATCAATGAATGTAGACAAAATATTTTTAATTGAAAGAGG AAATCTAACAAGCAAGCAAACTAAACTAGAGCATGAAGCACCCTCTCGAGACGCTTGGTGGACTAAGCAATCAGCCGTGT TATTTTATTCTCTTGGCACATGATCAATCGAAAGGTATCAATCCTAGGTAAGCATGGCTCGAACACAATTTAAAAGAAAA GAAAATCTTAAAACATGAAACATATCTCCACTTCATTGCTTGTAGCCCACGCTATCAACGGTCACTTCCCTAGTTGTATA TATTCTGTTAATCCCATCCCTGCGATTTCACAAAACCCTTCAACTAGGGTGACAGATACGCTACCTGACCAAAATTGTGT AGTTATGGAAACTAATTCTTCCTACGCCACCGTGAAGAAGTCACCGGAGAGTGACCGCTGCCGCCGTAAGCAGAAGAAGA ACAAAGCATCTGAAGAGCCGTGGCCTAAACCCGCTGATGACGCTAACAAGAACAATGATCCAAACCATGTTGCTGAACAG TTTGAAATTGAGTATTTACCGGAGAAGGGAGAGCTAGATGAAGAAGAAGGCATGGATGAAGAATTTAGAAGAATCTTTAC GAAATTCAGTTTTAGTGATTTCGCTGGTTCTAAGGATACTGGTATGAAGAAGGCTGATTCTGATACTGGTTCTGAAGAAG AAGATGGAGTAAAAGAGAAAGGAATTTCAAACAAGAAGAAGAAGCTTCAACGGAGGATGAAAATTGCTGAACTGAAACGA ATTTGCTCAAGGCCTGATGTTGTTGAAGTGTGGGATGCTACTGCATCTGATCCAAAGTTGCTGGTGTTTTTGAAATCTTG TAGAAATACTGTACCTGTGCCTAGGCATTGGAGTAGGAAGAGGAAATTTTTGCAGGGGAAAATAGGTATTGAGATAGAGC CCTTTCAGCTTCCTGAATTTGTTGCTGCCACTGGAATTGAGAAAGTTAGATTGAAACAAAAGCAAAGGGAACCATCAAAA TTGGGGAGAATGGAGATAGACTACAAGGTTCTACATGATGCATTTTTCAAGTACCAGAGGAAGCCAAAACTGAGTTCTGT TGGGGAGGTGTATCATGAAGGAAAAGAATTTGAGGTGAAGTTGAGGGAGATGAAACTGAAAGCTGGTGTGTTATCACATG AATTGAAAGAAGCTCTTGGTATGCCTGAGGGAGATGAATTGACTCCTCCATGGCTTATTAATATGCAGAGATATGGCCCT CCACCGTCATATCCTAACTATGAGGAGGAGTCAGTTGATAATACAAAACACTGGGGTGATTTGAAGGAGGAGGAAGAAAG GGAAGAGGAGGAAGAAGAAGAAATGGAGGAGGAGGAACTTGAAGTTATTGAGCTTAGGAAGCAACAGAGGAAGGAGCTTG AGTGGCCTCTTTATCAGGTGGTACTTTGAAGAGAAGGAAGAAAAAATTGCTCCACCAACTTTGCTTGGAACCACTCACTT AAAACCAAGTTATTAGGTTAGTTGTTCTTTTATTTGTGTAAGTATAGGTTTTTTCTTTCTTTAGATAACTTGTTAGTTTT ATTTGGATAAATTGTACTTTAGTTTATTAGGTTTGGTTTTTATAAGTACTTTTGTAACCAGATTTAAAGGTAACTTTGAA TTGAATTTAGTTATTGAGGTTTATTTCCTCTAGTGAGTGCGGCTAGTCTCTATCCGGGTTCTTGGATGAACCACCATTGA TCTTATTAAGATCTTTTTAATTCTTATGGCGATCCCTGTTTGACTTGTGATTGTAGCACCTTCTTCATCTCTATTCTCAT TTATTTTATTTTTAATTCTTATTTAAGTGCGTTCCTTATTTATTTTATATAAAAAGAAAAAACCTGATCCTCTTCTCTTG TCCATTTACTAATGGTAAACAACTTCACTCTCGATATCTAACATAAGTATGAAGAAAAAAAGGATAGCACTAGTTTGATT GAAGAGAGTGTGTTTCAGAACACATAGATACAAGCTTCTCTAT
CDS sequence (LotjaGi1g1v0395800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACATATCTCCACTTCATTGCTTGTAGCCCACGCTATCAACGGTCACTTCCCTAGTTGTATATATTCTGTTAATCC CATCCCTGCGATTTCACAAAACCCTTCAACTAGGGTGACAGATACGCTACCTGACCAAAATTGTGTAGTTATGGAAACTA ATTCTTCCTACGCCACCGTGAAGAAGTCACCGGAGAGTGACCGCTGCCGCCGTAAGCAGAAGAAGAACAAAGCATCTGAA GAGCCGTGGCCTAAACCCGCTGATGACGCTAACAAGAACAATGATCCAAACCATGTTGCTGAACAGTTTGAAATTGAGTA TTTACCGGAGAAGGGAGAGCTAGATGAAGAAGAAGGCATGGATGAAGAATTTAGAAGAATCTTTACGAAATTCAGTTTTA GTGATTTCGCTGGTTCTAAGGATACTGGTATGAAGAAGGCTGATTCTGATACTGGTTCTGAAGAAGAAGATGGAGTAAAA GAGAAAGGAATTTCAAACAAGAAGAAGAAGCTTCAACGGAGGATGAAAATTGCTGAACTGAAACGAATTTGCTCAAGGCC TGATGTTGTTGAAGTGTGGGATGCTACTGCATCTGATCCAAAGTTGCTGGTGTTTTTGAAATCTTGTAGAAATACTGTAC CTGTGCCTAGGCATTGGAGTAGGAAGAGGAAATTTTTGCAGGGGAAAATAGGTATTGAGATAGAGCCCTTTCAGCTTCCT GAATTTGTTGCTGCCACTGGAATTGAGAAAGTTAGATTGAAACAAAAGCAAAGGGAACCATCAAAATTGGGGAGAATGGA GATAGACTACAAGGTTCTACATGATGCATTTTTCAAGTACCAGAGGAAGCCAAAACTGAGTTCTGTTGGGGAGGTGTATC ATGAAGGAAAAGAATTTGAGGTGAAGTTGAGGGAGATGAAACTGAAAGCTGGTGTGTTATCACATGAATTGAAAGAAGCT CTTGGTATGCCTGAGGGAGATGAATTGACTCCTCCATGGCTTATTAATATGCAGAGATATGGCCCTCCACCGTCATATCC TAACTATGAGGAGGAGTCAGTTGATAATACAAAACACTGGGGTGATTTGAAGGAGGAGGAAGAAAGGGAAGAGGAGGAAG AAGAAGAAATGGAGGAGGAGGAACTTGAAGTTATTGAGCTTAGGAAGCAACAGAGGAAGGAGCTTGAGTGGCCTCTTTAT CAGGTGGTACTTTGA
Protein sequence (LotjaGi1g1v0395800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKHISTSLLVAHAINGHFPSCIYSVNPIPAISQNPSTRVTDTLPDQNCVVMETNSSYATVKKSPESDRCRRKQKKNKASE EPWPKPADDANKNNDPNHVAEQFEIEYLPEKGELDEEEGMDEEFRRIFTKFSFSDFAGSKDTGMKKADSDTGSEEEDGVK EKGISNKKKKLQRRMKIAELKRICSRPDVVEVWDATASDPKLLVFLKSCRNTVPVPRHWSRKRKFLQGKIGIEIEPFQLP EFVAATGIEKVRLKQKQREPSKLGRMEIDYKVLHDAFFKYQRKPKLSSVGEVYHEGKEFEVKLREMKLKAGVLSHELKEA LGMPEGDELTPPWLINMQRYGPPPSYPNYEEESVDNTKHWGDLKEEEEREEEEEEEMEEEELEVIELRKQQRKELEWPLY QVVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 404 | 388 | - | – | |
| PANTHER | 55 | 348 | 294 | 2.0E-113 | – | |
| PANTHER | 55 | 348 | 294 | 2.0E-113 | – | |
| MobiDBLite | 59 | 96 | 38 | - | – | |
| MobiDBLite | 63 | 95 | 33 | - | – | |
| MobiDBLite | 139 | 167 | 29 | - | – | |
| MobiDBLite | 141 | 165 | 25 | - | – | |
| Coils | 161 | 181 | 21 | - | – | |
| Pfam | 186 | 298 | 113 | 1.4E-40 | ||
| SMART | 305 | 359 | 55 | 5.1E-14 | ||
| Pfam | 309 | 352 | 44 | 1.6E-17 | ||
| MobiDBLite | 344 | 381 | 38 | - | – | |
| Coils | 360 | 390 | 31 | - | – | |
| MobiDBLite | 366 | 381 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0395800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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