Domain Predictions — View

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SM00581

Source: SMART

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0303019.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCHC domain-containing protein [Medicago truncatula] gi\|358346605\|ref\|XP_003637357.1\|	Domains IPR001878 IPR006568 PF04046 PS50158 PTHR13316 SM00581 mobidb-lite	7
Lj0g3v0332629.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi\|356549367\|ref\|XP_003543065.1\|	Domains Coil IPR006568 IPR007180 PF04037 PF04046 PTHR12785 PTHR12785:SF8 SM00581 mobidb-lite	9
Lj1g3v1991490.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi\|356546253\|ref\|XP_003541544.1\|	Domains Coil IPR006568 IPR007180 PF04037 PF04046 PTHR12785 PTHR12785:SF8 SM00581 mobidb-lite	9
Lj4g3v0450500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi\|356546253\|ref\|XP_003541544.1\|	Domains Coil IPR006568 IPR007180 PF04037 PF04046 PTHR12785 PTHR12785:SF8 SM00581 mobidb-lite	9
Lj4g3v0450500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi\|356549367\|ref\|XP_003543065.1\|	Domains CYTOPLASMIC_DOMAIN Coil IPR006568 IPR007180 NON_CYTOPLASMIC_DOMAIN PF04037 PF04046 PTHR12785 PTHR12785:SF8 SM00581 TRANSMEMBRANE mobidb-lite	12
Lj6g3v2044560.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: splicing factor 3B subunit 2-like [Glycine max] gi\|356549367\|ref\|XP_003543065.1\|	Domains Coil IPR006568 IPR007180 PF04037 PF04046 PTHR12785 PTHR12785:SF8 SM00581 mobidb-lite	9
LotjaGi1g1v0395800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp\|Q13435\|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr\|A0A0B2PLT4\|A0A0B2PLT4_GLYSO Splicing factor 3B subunit 2; Found in the gene: LotjaGi1g1v0395800	Domains Coil IPR006568 IPR007180 NON_CYTOPLASMIC_DOMAIN PF04037 PF04046 PTHR12785 PTHR12785:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00581 mobidb-lite	14
LotjaGi1g1v0508000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp\|Q13435\|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr\|A0A0L9VGH3\|A0A0L9VGH3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0508000	Domains Coil IPR006568 IPR007180 PF04037 PF04046 PTHR12785 PTHR12785:SF12 SM00581 mobidb-lite	9
LotjaGi2g1v0056900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Zinc finger CCHC domain-containing protein 8; TAIR: AT5G38600.1 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|Q6DD45\|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8; TrEMBL-Plants: tr\|K7LXS2\|K7LXS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056900	Domains IPR001878 IPR006568 PF04046 PS50158 PTHR13316 PTHR13316:SF0 SM00581 mobidb-lite	8
LotjaGi4g1v0053200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Splicing factor 3B subunit 2; TAIR: AT4G21660.3 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp\|Q13435\|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr\|A0A151T7A8\|A0A151T7A8_CAJCA Splicing factor 3B subunit 2; Found in the gene: LotjaGi4g1v0053200_LC	Domains CYTOPLASMIC_DOMAIN Coil IPR006568 IPR007180 NON_CYTOPLASMIC_DOMAIN PF04037 PF04046 PTHR12785 PTHR12785:SF12 SM00581 TRANSMEMBRANE mobidb-lite	12
LotjaGi6g1v0335000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Splicing factor 3B subunit 2; TAIR: AT4G21660.1 proline-rich spliceosome-associated (PSP) family protein; Swiss-Prot: sp\|Q13435\|SF3B2_HUMAN Splicing factor 3B subunit 2; TrEMBL-Plants: tr\|A0A0B2PLT4\|A0A0B2PLT4_GLYSO Splicing factor 3B subunit 2; Found in the gene: LotjaGi6g1v0335000	Domains Coil IPR006568 IPR007180 PF04037 PF04046 PTHR12785 PTHR12785:SF12 SM00581 mobidb-lite	9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09