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Lj3g3v0807630.1

Overview

Field Value
Gene ID Lj3g3v0807630
Transcript ID Lj3g3v0807630.1
Lotus japonicus genome version MG20 v3.0
Description 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357455709|ref|XP_003598135.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 350 350 – –
SUPERFAMILY
SSF49764
10 114 105 6.28E-14
IPR008978
Gene3D
G3DSA:2.60.40.790
11 114 104 1.30E-11
IPR008978
PANTHER
PTHR11527
15 137 123 2.40E-37
IPR031107
PANTHER
PTHR11527:SF131
15 137 123 2.40E-37 –
ProSiteProfiles
PS01031
28 108 81 11.49
IPR002068
CDD
cd06464
28 108 81 2.70E-11 –
Pfam
PF00011
29 110 82 9.60E-08
IPR002068
MobiDBLite
mobidb-lite
107 231 125 – –
Coils
Coil
232 262 31 – –
MobiDBLite
mobidb-lite
293 314 22 – –
TMHMM
TMhelix
350 369 20 – –
Phobius
TRANSMEMBRANE
351 371 21 – –
Phobius
CYTOPLASMIC_DOMAIN
372 379 8 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v0807630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0807630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.